Shewanella avicenniae: JYB87_08665
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Entry
JYB87_08665 CDS
T07845
Name
(GenBank) efflux RND transporter permease subunit
KO
K18307
multidrug efflux pump
Organism
savi
Shewanella avicenniae
Pathway
savi02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JYB87_08665
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_08665
Transporters [BR:
savi02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB87_08665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
QSX35247
LinkDB
All DBs
Position
1952161..1955253
Genome browser
AA seq
1030 aa
AA seq
DB search
MHFTDLFIRRPILSIVVSLMILLIGISATYNLPIRQYPQMESATITIDTQLPGATQDMMQ
GFVTTPIAQAISTASGIEYITSTSRQGKSHISAKLVLNADADRSMTEILSKVQTVKYRLP
EGVTDPVIAKITDGASAIQYLAFVSDSLAPAQIADFISRVAQPLITSVPGVASATVVGGA
PFAMRIWVDPVKLAARGMTASDVAGALRSNNIQASPGQLKGDSTALNITAGTDLRSIDAF
RNMVLKQGSQGVVRLQDIATVELGGQNYDSGMLASNRKAVSVAISPTPDGNPLDIVAQIN
DLIDDMQKVAPPGLEVISQFDVAHFVDASIEEVQHTLVEAIAIVVIVIFLFLGTFRAVII
PIVTIPLSLLGTAALMLAFGFSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGLSPF
NAALKGAREIVGPVIAMTITLAAVYAPIGMMGGLTGALFREFAFTLAGSVIVSGVVALTL
SPMMSGKLLQSRQAESKLEKWIEHYMEGLTQRYVKLLDKTLVSRPAVLLVGVVILAAIGA
LFAGAKRELAPAEDMGYVFAQTKAPQYANVDYTTKYSTQVDKIFQQLPEFERSFFAISHE
EANIGFGGVILKEWSERERSADEIQAQLAGMTAGVDGVYTSLFQDSPLPASTGGLPVQMV
IRSSGEFSELYQTLMGLKGAAWGSSLFAFVDSDLAFDSAEAHIEIDRDKAGELGISMAEI
ADTLAILVGENYINRFNWFDRSYDVITQVPQNQRLTPDNLGNYYVRTGAGKLVPLSTVVS
VEIKPQANKLPQFNQMNSATLSAVLLPGVTMGQAVNFLQQQPLPDGVTVDWLSNSRQFVH
EGNRLTVSFAFALIVIFLVLAAQFESFRDPLVILVTVPLAVCGALVPLYLGFTTLNIYTQ
IGLVTLIGLISKHGILMVSFANDMQLHEKMSKLEAIRHSAAVRMRPVLMTTAAMVAGLVP
LLFAAGAGAASRFAIGIVVVMGMLIGTLFTLFVLPTIYTLLAANHQDDHADEAIDADRAV
SVASAEVAHG
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgcactttactgatctttttattcggcggccgatattatcgatcgtcgtcagcttgatg
attttactgatcggcataagcgccacttacaacttgcccattcgtcagtatccgcagatg
gaaagtgcgacgatcactattgatacgcaactgccgggtgcaacgcaggacatgatgcag
ggttttgtgacgacaccgatcgcacaagcgatctcgactgccagcggtattgagtacatc
acctcaacatcgcgccaaggcaaaagtcatatctctgccaagttagtgttgaatgcggat
gcggatcgttcaatgaccgaaatcctatccaaagttcaaacggtgaagtatcgcttgccg
gaaggggttaccgatcccgtgattgcgaaaatcaccgatggcgcgtcggcaattcagtac
ttggcttttgtgagtgatagtttggcgccagcgcaaattgctgatttcatctcgcgggta
gcacaaccattaattacctctgttcccggcgtggcctcagcgacagtagtgggtggtgca
ccatttgcgatgcggatctgggttgaccccgtgaaactggctgcgcgcggaatgacggcg
agcgatgtcgccggcgcgctgcgcagtaacaacattcaagcttccccgggccaattaaaa
ggggattcaaccgcactgaatattacggcgggtactgacctgcgcagtattgacgcgttt
cgcaacatggtactcaagcaaggcagccaaggcgtggtgcgtttgcaagatatcgcaact
gtcgagcttggtggccagaattatgattccggcatgttggcctcaaaccgcaaagcggta
tcggtggctatttcgccaacaccggatggtaacccattggatatcgtcgcgcagatcaat
gatttgattgacgatatgcaaaaagtcgcaccaccgggattagaagtgatcagccagttt
gacgtagcacactttgtggatgcctcaattgaagaggtgcaacacacactggttgaagca
atcgcgattgtggtgattgtgatctttctgttccttgggactttccgtgccgtcatcatt
ccgattgtgactatcccactgtcattgctgggcaccgccgcgctaatgctggcctttggc
ttctcgctgaaccttctcaccttgttggcgatggtgctggcgattggcttggtggtggat
gatgcgattgtggtggttgagaacattcaccgccatatagaagaagggttatcccccttt
aacgctgcattgaaaggcgctcgtgaaatcgttggtcccgtgattgcgatgacgattacc
ttggcagctgtgtatgcgcctatcggtatgatgggtggcttaactggcgctttgttccgt
gagtttgcctttacccttgcgggatctgtgattgtctcgggagttgttgcattaacactg
tcgccgatgatgagcggaaaattgctgcagtcacgtcaggccgaatccaagttggaaaaa
tggattgagcattacatggaagggctgactcagcgctatgttaagttactggataaaact
ctggtatctcgtccggcggttttgctggtgggcgtggttattctggctgccattggtgcg
ttattcgcgggtgcgaaacgtgaactcgcgccagcagaagatatgggctatgtatttgcc
caaactaaggcgccgcagtatgccaacgtcgactatacgactaagtacagcacccaagtg
gataagatcttccagcaattgcctgaatttgagcgtagcttttttgccattagtcatgaa
gaagccaatatcggcttcggtggggtgatcttaaaagaatggtctgagcgcgaacgcagt
gccgatgagatccaagcccaactggccggaatgacggctggcgttgatggggtttacacc
tctttattccaagacagccctttgccagcctctaccggtggtttgccagtgcagatggtg
atccgttcatcaggagaatttagtgagctgtaccaaacactgatgggacttaaaggtgca
gcgtggggcagtagtttattcgcctttgttgatagtgacttggcgtttgatagcgccgaa
gcacacatagagatcgatcgcgacaaagcgggcgaactagggatcagcatggctgaaatc
gccgacaccttggccattttggtgggcgaaaactatatcaaccgctttaactggtttgat
cgctcctatgatgtcatcacgcaagtgccgcaaaaccaacgcttaacgccagataacctc
ggtaactactatgtccgcaccggtgctggtaagttggtgccattgtcgaccgtggtgagt
gttgagattaagcctcaggcgaataagttgccgcaatttaaccagatgaactcggcaact
ttgtcagcagtgttgctgccaggggtgacgatggggcaagcggtgaatttcctgcaacag
caacctttgccggatggtgttaccgtggattggctatcgaatagccgccagtttgtccat
gaaggtaatcgcctgacggtatcgtttgcctttgccttgattgtgattttcttggtatta
gcagctcagtttgagagcttccgtgacccgttggttattttggtgactgttccgctcgct
gtgtgtggtgcgctagtaccgctatatttagggtttactacgctcaacatctacacccag
attggtttagtgaccttaattggcttgatttccaaacacggtattttgatggtgtctttt
gccaacgatatgcagttacatgaaaagatgagcaagctagaagcgattcgtcattcagca
gcggtgcggatgcgcccagtattgatgacaaccgctgcgatggttgctggcctagtgcca
ctgctgtttgccgctggtgcaggtgcagcaagccgcttcgctatcgggattgtggtggta
atgggtatgctgattggtacgctgtttaccttgttcgtattgccaaccatttacactctg
ttagccgcaaatcaccaagatgatcatgctgatgaagcgattgatgctgatcgcgctgtt
agtgtagctagtgcggaggtggctcatgggtaa
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