Shewanella avicenniae: JYB87_09065
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Entry
JYB87_09065 CDS
T07845
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
savi
Shewanella avicenniae
Pathway
savi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB87_09065 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_09065 (recC)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB87_09065 (recC)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB87_09065 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QSX35321
LinkDB
All DBs
Position
2052117..2055584
Genome browser
AA seq
1155 aa
AA seq
DB search
MFKLIQSNKMELLSATLADQIRTPLAGQSPLSSEHILVQSPGMSTWLRLEIAKHNGIAAG
LEFPLPSSFIWQLCHTLLLDVPQENAFTKEAMTWKLLSLLPTLIEQPIYAPLARYLHQAS
SQPELKRYQLAARIADIFDQYLVYRPDWIADWEAEQQPINLSDDQAWQPQLWRELVAYNH
SLGLSHYHRANLHQALVDVLQDDSKPLPQLPARLFVFGISSIPPQTLSVLHALGHRIPVT
VLSLSPCQHYWGDIVNPKARARINLTYGEKRQLPENWQENLIVGNPLLANNGKLGRELLD
LMLELPADAIELGDDLFYPAGDDKLLRGIQQDILDMETRGRLLGPDSELYLSLDGRRILA
DDDDSLLLRSCHSPLREVETLHDHLQFMLANNPQLSAKDIVVMLPDVAAYAPYIDAVFSR
REGRFNIPYAIADRGASQESPLINGFLALLNINRSRFALTEVLAILEVPATLKRFGLDDE
ELALIRQWLDKAGIRWGRSGKSRTQQQLPAFEQNSWAVGLKRLILGYALEDDADLYANHL
AVAGVEGQNAQALGKLFNFIESLDELSVQLNQPVDVAPRIQQLSAICDSFYSSSDDRDTQ
ALMTINAAIAKLESELFKAGFDEPLDNSILQQWFSSQLDESRVGQRYLAGSVNFCTLMPM
RSIPFKVVCLLGMNDGLYPRVQHPIGFDLMAQQPPRKGDRSRRLDDRYLFLEALLSARQQ
LYISYVGRSQRDNSPRNPSMLIAELLEYCQLTCMPASLATQFVAEPLTADQLTRLEQTLN
ARLIKQQPLQPFDASLYQAELLQQHGDLPLTPSFSSQWCPTPIESITAFADGTPLIAEQL
DTQETMAELQIIELQALVRFYRNPAQYFFNRSLKLDLSIALDADDNDEPFKPDGLQRYQM
QLEMINDALAHEGVMQADVAQKLKASGRLPNAPFDEITLNQYRRDTAPLIERCQFLRGDN
QAKLDIDLPFPALKLRLQGHLDNVAGKGLVDYRPGKANGKDLIRVYLRHLAMNCSGLQRH
SYLLDIHDFHAFSPLSSEQAHVQLSVWLQYFLSGQTTPIMLMPKTSLAYVMSDGEHQERL
QECRKTWEASQIGGEGADPHYQRCFQYPDDFTEDNFGAIALTLLQPLQSLYSKGKLEQLG
DFVANGGMTLQGAAQ
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacttattcagtccaacaaaatggaattgctctccgcaactttggcagatcag
atccgcacgccactcgcggggcaatcaccgctaagttctgagcatattttggtacaaagc
ccggggatgtcgacctggctcagactagaaattgccaaacacaatggcatcgccgcagga
ttagaattccccttaccttcgagctttatttggcagttatgccatacgctactgcttgat
gtgccacaagaaaacgcctttactaaagaggccatgacttggaagctgctttccttgctg
ccgacgcttatcgagcaaccaatctatgcgccgttagctcgctatcttcatcaagcgtca
tcgcagccggaacttaaacgttatcaattggccgcccgtatcgctgacattttcgaccaa
tatttagtgtaccgccctgattggattgctgactgggaagcagaacaacagcctattaac
ctgagcgacgaccaagcatggcagccacagctatggcgcgaactggttgcttataatcat
tcactcgggttaagccattatcaccgtgccaacctacatcaagccttagtcgatgtgttg
caggacgacagcaagccgttacctcaattgcccgcgcggctgtttgtgtttggaatctcg
tcaatcccaccgcaaacattaagtgtgttacatgcgcttgggcatcgtattccggtcact
gtgttaagtctcagtccttgccagcattattggggcgacattgttaatcctaaggccagg
gcgcggattaatctgacctatggcgagaagcgacaactgcccgaaaattggcaagagaac
ctgattgttggcaatccattactggccaataacggcaaattggggcgtgaattactcgat
ttgatgttagagctgcctgctgatgccattgaacttggcgatgacctgttttatcccgca
ggtgacgacaagctgctgcgcggtattcagcaagatattctcgatatggaaacccgtggc
cgtttgttaggccctgatagcgagctgtacctcagcctcgatgggcggcgtatattggcg
gatgatgacgattcgctactgctgcgcagctgccactcaccgctgcgtgaagtggaaacc
ttgcatgatcatctgcaatttatgttggcaaacaatccgcagctatctgccaaagatatc
gtggtgatgctgccagacgtagcagcttacgctccttacatagatgcagtgttttcgcgg
cgtgaaggccgtttcaatattccctatgccattgctgaccgtggtgccagccaagagtcg
ccgttaattaacggttttcttgcgctgttgaatatcaatcgcagtcgctttgccttaaca
gaggtactcgcgattcttgaagtgcccgccaccttaaaacggtttgggctggacgatgaa
gagttagcgctgatacgccaatggctcgataaagccggtatacgctgggggcgcagcggc
aaaagccgcacccagcagcaactacctgcgtttgaacaaaactcatgggcggtaggatta
aagcgcctcatccttgggtatgcacttgaagatgatgccgatttatatgctaaccatctc
gctgtcgctggggttgaaggtcaaaacgcccaagcgttgggtaaactattcaattttatt
gaatcattagacgagttaagtgttcaactcaatcaacccgtggatgttgccccgcgtatt
caacaacttagtgcaatttgtgacagcttttatagcagcagcgatgaccgcgacactcaa
gcgttaatgactattaatgccgccatcgccaaattagagtcagaattattcaaagcaggt
tttgacgagccactcgacaacagcattctgcaacagtggtttagcagtcagttagacgaa
tcgcgcgtcggccagcgctatctggcaggaagcgtcaacttctgcaccttgatgccgatg
cgttcaattccgttcaaagtcgtctgcttactcgggatgaatgacggtctgtaccctcga
gtgcaacatcctattggttttgatttgatggcacagcagccaccgcgtaaaggtgaccgc
tcacggcgactcgatgatcgttatctatttttggaagcgttgttatcagccagacagcaa
ctctacatcagttatgtagggcgttcgcagcgggataacagcccgcgcaatccatcgatg
ctgattgccgaactgttggaatactgccagttaacttgtatgccggcgtcactggccacg
cagttcgtggctgaaccgctgactgctgaccaactgacgcgactagagcaaacgctcaat
gcacgcttgattaaacaacagccgttacagccatttgatgcatcgctgtatcaagctgag
ttattacagcagcacggcgacttgccgttgacgccttcgttttccagccaatggtgtcca
accccaattgaatcaataactgcgtttgctgacggtacgccattgatcgctgaacaattg
gacacgcaagagaccatggcggaactccaaatcatcgagttacaagccttagtccgtttc
tatcgtaaccctgcacaatatttctttaaccgtagcctgaagctcgatttatccatcgcg
ttagatgccgatgataacgacgagccatttaaacccgatggtttgcaacgctatcagatg
cagcttgagatgattaacgatgcactagcccatgagggtgtgatgcaagcagatgtcgcg
caaaagctcaaagccagcgggcgcttgcctaatgccccgtttgatgaaatcaccttgaac
caatatcggcgcgacacggcgcccttaatcgagcgatgtcagtttttacgcggcgataat
caagccaaattggacattgatttgccattcccagcactaaaactgcggctgcaaggccac
cttgataacgttgcgggtaaaggcttagtggattaccggccgggcaaggccaatggtaag
gatctgatacgggtctatttgcgccacttggcgatgaactgcagcggtttacagcgccat
agttatctgctcgatattcatgattttcatgcgttttcgccacttagcagcgagcaagca
cacgtacaactgagtgtttggctgcaatattttctctcgggtcaaactacgccaataatg
ctaatgccaaagacttcactggcttatgtgatgagtgacggcgaacatcaagaacgacta
caagaatgtcgtaaaacttgggaggctagccaaattggtggcgagggtgcagatccgcat
tatcagcgctgttttcaataccctgatgattttaccgaagataacttcggcgcaatcgct
ctgacgctgctgcaaccgctccaatcgctatacagcaaaggcaagctcgagcaacttggc
gactttgttgccaatggtggcatgacgttacaaggagcagcccaatga
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