Shewanella avicenniae: JYB87_09070
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Entry
JYB87_09070 CDS
T07845
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
savi
Shewanella avicenniae
Pathway
savi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
JYB87_09070 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_09070 (recB)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
JYB87_09070 (recB)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB87_09070 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_11
AAA_25
YbfN
Motif
Other DBs
NCBI-ProteinID:
QSX35322
LinkDB
All DBs
Position
2055581..2059306
Genome browser
AA seq
1241 aa
AA seq
DB search
MSTPQLLNPLTLPLHGARLIEASAGTGKTYTISGLYLRLLLGIGVESALTCEQILVVTFT
NAATEELRDRIRSRIRQAYRACLGLPEADDFIQTLLAPLNDEQRHQALIRLDLALKSLDE
AAIFTIHGFCQRILSDLAFESSLLFEAEFTLDDSEFLHHAVRDFWREHCYSLSGVLAQTI
QSLFEEPQKLQGMLRPLLGNSEAIASPTPLAFENIATALLPKLARLKQQWSSARETLQQQ
LFSLSLNASRYGSQAAGYPKLVAAFEAMDAWVTSQHALPVEDVIDKLSLAKLKVNKTSAP
APTAEQAPLMALIDEISELLSNIKPAFLYLARDNIRARFQAQKAQRNVLTPDDLLSTLAH
ALGHQQQDQTAGQVLAKEVAKRFPMALIDEFQDTDPLQFAIFSRIYQQYYSFDDAEQQIG
EQTRAALLMIGDPKQAIYAFRGGDIHTYIAAKHTTQGQYTLGTNYRSSESMVTAVNTLFS
RHPAPFAGEDIPFEAVEVPPSATHKQLVSAEDNHAMQIRLLAEDAEAGLSKDPARELLAE
DAAEQILALLQQDSQLQNGTKSRRLIARDIAVLVRDHNEASAMKLALSRRNIGAVFLSRD
SVFGTVEARELALILTALINPREEFALRSAMATQLLGQTIGQIHQFNLQEDVRAWWLEQF
ERWHQLWLTRGIMPAIIQLAADTEMIQRLLNSENGERCLTDLRHLCELLQQKAAEADGPA
ALLHWYEQQLVDAQNGEEQQLRLESEQNLVQIVTIHKSKGLEYPVCFVPFVSLGYHSRTP
EPLLYHDNNQLIWDLSGDKDAIDQQKQEQLAEDLRLLYVALTRPVYRCYLSVANYSRKLK
AGIKSYLPNTAIGYLLGLDNEDLSFAELATHINQLSSAAISVTSIVPQGVSGSLQANDET
RQNVTPLQLEIPAQHYWRVGSYSGLIKESQHHGVSEVDDLSSELPPQSPGMDDEVFDPLL
AQLPAPEQAPAPRFLFEKGANAGSFMHQVLEDLDFDASDKAAALAAVLPNAMRKYGIAET
EYPVLLEWYQQILAAPLGSEMRDKGLSLAVLKANDAIAEMEFYLPVAELDCHALNALLAQ
YGYQAGLSFETLRGMLKGFIDLTFQFHNRWYIADYKSNHLGNSFTDYHGSNLQQAMFEHR
YDLQYLLYTLALHRQLSKRMQDYQYQRDIGGCYYLFLRGMSPEHPQAGIYYDRPPQALIE
ALDALFSGESAANADKDVDGTNSPSPLTPTAQQSQLDLELF
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaccacaactgcttaatccgctcacgttaccgcttcacggtgcacgcttgatt
gaagccagtgcgggcacaggtaaaacctatacgatttcggggctgtatttacgcttattg
ctggggattggtgttgaaagcgccctcacctgtgaacaaattttggtggtgacgttcacc
aacgccgccaccgaagaactgcgcgatcggatccgcagcagaatccgccaagcttatcgc
gcctgtttagggctgcccgaagccgatgattttattcaaaccctgttagcacctctgaat
gacgaacagcgtcatcaagcattgatacgcttagatctggcgctgaaatcccttgatgag
gcagccatttttaccattcacggtttctgccagcgtattctcagcgatttagcctttgaa
tcgagcttactgtttgaagccgaattcaccctcgatgacagcgaatttttacatcatgcg
gtgcgtgatttttggcgggaacactgttactcactctctggcgtgttagcgcaaacgatt
cagtcgctattcgaagagccgcaaaaattacaaggcatgttgcggccactgttgggcaat
tctgaggccattgcctcaccaacaccgttagcgtttgaaaacatcgctacggcgttgtta
cctaagttggcgcggctgaaacaacaatggtcaagtgcgcgcgaaacactgcaacagcaa
ctgtttagtttgtcgttgaatgccagccgttacggcagccaagcggcaggttatccaaaa
ctggtggccgcgtttgaagcaatggatgcttgggttacatcacaacatgcgcttcccgtt
gaagacgtgattgataagctgtcattagctaagctcaaggtaaataaaaccagtgcgccg
gcccccacagctgagcaagcgccactgatggcgttaattgatgaaatttctgagctgtta
agcaacatcaaacctgcgtttttgtacttggccagggataatattcgcgcgcgctttcaa
gctcaaaaggcgcagcgtaatgtgctgaccccagatgatttactgtcaaccttagcccat
gcccttgggcatcaacagcaagaccaaactgcagggcaagtgttggccaaagaggtcgcg
aaacgcttcccaatggcgctaatcgacgagtttcaagataccgacccgctgcaatttgcg
attttttctcggatctatcaacagtactactcgtttgatgatgctgaacagcagattggc
gagcaaacccgcgccgcattattgatgatcggtgacccaaaacaggcaatttacgccttt
cgtgggggggatatccatacttacattgccgccaaacacaccacccaagggcaatacacc
ttaggcaccaactatcgctccagtgaatcgatggtgaccgcggttaacaccctgtttagt
cgacatcccgcgccctttgccggtgaagatattccgtttgaagcggttgaagtgccaccc
tccgcgacacacaagcagctagtgagcgctgaagataatcatgcgatgcagatccgccta
ttggcagaagatgctgaagcgggattgagcaaagatccggcgcgggaactgctggcagaa
gatgccgctgaacagattctggcattgctgcagcaagacagtcagctgcaaaatggcaca
aaatcgcgtcggctgatagccagagatattgcggtgctggtgcgcgatcacaacgaagcc
tcggccatgaagctagctttatcgcggcgtaacatcggtgcggtatttctcagtcgagat
agcgtgtttggcacggttgaagcgcgcgaattagcacttatcttgactgcacttatcaat
ccgcgtgaagaattcgcgctacgcagcgcgatggccacccaactgcttgggcagacgatc
ggccagatccaccaatttaatctgcaagaagatgtacgggcgtggtggttagaacaattt
gaacgttggcatcagctatggctcacacgtggcattatgcccgccattattcagttagcg
gctgatactgagatgatccaacgcttactgaacagtgagaacggtgaacgctgcctcacc
gatttacgccatctgtgtgaattattgcaacaaaaagccgcagaggcggatggcccggcc
gcattgcttcactggtatgaacaacagctggtggacgctcaaaacggtgaagagcaacag
ctgcgtttagaaagcgaacaaaacttagtgcaaatcgtcaccattcataaaagtaaaggc
ttggaatatcccgtatgttttgtgccgttcgttagccttggataccacagtcgcacacca
gagccactgctctatcatgacaataatcagcttatttgggatctgtctggtgataaagat
gcgatcgatcagcagaagcaggagcaactagcagaagatttgcggctgttgtacgtggca
ttgacccgccctgtatatcgctgctacctatcagtagccaactactcacgcaagcttaag
gctggcatcaagagttatttgccaaataccgcgattggctatctgttagggctggacaac
gaagatctcagctttgcggagttagcaacccatatcaatcagctcagttccgccgccatt
tcggtcactagcatagtgccgcaaggagtgagtggcagtctgcaagccaatgacgaaacg
cggcagaacgttacaccgttgcagctagaaattcctgcacagcattactggcgcgttggc
agttacagtggcttgattaaggaatcacagcaccacggcgtttctgaagttgatgacctc
agcagcgaactgccgccacaatcaccaggcatggatgacgaagtgtttgatcctctactg
gcgcaactgcctgcaccggaacaggcgcccgcaccgcgatttttgtttgaaaaaggagcc
aatgccggttcttttatgcaccaagtgttagaagatctcgattttgacgcaagcgataaa
gccgccgcgctggcagcggtgctgccaaatgcaatgcgcaaatatgggatagcggagact
gaatacccagtgttactggaatggtatcagcagatcctcgctgcgccactcggtagcgaa
atgcgtgacaaaggcttaagtctcgcggttctaaaagcaaacgatgcaattgcggaaatg
gagttttatttaccggtcgctgaactcgattgccacgcactaaacgcgctgctggcacaa
tacggctaccaagcggggctgagctttgaaaccttgcgcggaatgctcaaaggctttatc
gacttaacctttcagttccacaatcgctggtatattgccgactataaatcgaatcacttg
ggcaacagttttaccgattaccacggctcaaatttgcagcaagccatgttcgagcatcgc
tacgatttgcagtacttactgtacaccttagccttgcatcgccagttgtccaaacggatg
caagattatcaatatcaacgcgatatcggtggttgctattacctgtttcttcgcggcatg
tcccccgaacatccgcaagcggggatttattatgatcggccaccgcaagcattaatcgaa
gcgttagatgcactcttcagtggggagtctgcagccaacgcagataaagacgttgatggc
actaattcaccgtcaccgttaacgcccactgcgcagcagtcacaactcgatttggagctg
ttttaa
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