Shewanella avicenniae: JYB87_11245
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Entry
JYB87_11245 CDS
T07845
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_11245
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
JYB87_11245
Archaeal homologous recombinant proteins
JYB87_11245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_27
AAA_29
CENP-F_leu_zip
AAA_21
Motif
Other DBs
NCBI-ProteinID:
QSX32344
LinkDB
All DBs
Position
complement(2548667..2551747)
Genome browser
AA seq
1026 aa
AA seq
DB search
MKPLQLTMTAFGPFADKQVIDFRELGQNPLFLINGPTGAGKTSILDAICFALYGKTTGNE
REAPQMRCDYADDSLMTTVEFQFELGERCYLIKRTPDQQRPKARGDGYTNQSAEAKLQRL
LPDGSAELLVASRVSEATSMVEELTGLDVDQFRQVMVLPQGKFRELLLADSKAREKIFSQ
LFQTSIYSRIEERLKAQAKAIRDEAHDLEQKRLGILDTAGVESTDALTNAISELTPLCEH
AKQQKTQASAKLDEANKQLDAGKRLNSELAEQARVAQSLEQAKARQAEMDRVKQQLKLAQ
MAQQVLPVYRQQQQRSRELIAQQQALTAAEQQLRHATQQKQQADSAAQQLPALDQQLQFS
RSAQQHAEQLKPLLENYYQQQQQLDQANTELQRVIKAQQTAEQQLQQLQAKKTQLTQAMA
ELQQHAGQLSELQQQQYQWQRQCEQGQQIVGLQQQQQRLNHQLTQKAEQGKQAKAALDTA
EAQLTQLRIQWHQGQAALLAQQLGPNVPCPVCGSQQHPNPAHSELEIPTEQQLEHAQQQL
DSKRSICETLRSDYRSLRDQLAGLEQQLVPLFSALVLDYQAPLPLDEWQQQLTATQQQFA
AAQQAQQQLSKQQQQLSALEQQLTTQQQQLNSAQQQVAEQQSHCSSLAGALTENQRRLPA
ELQNLTAAAALAQLTDQLQQLAQQQSGLTAQINQIQQAQQQATAQLATAESALAASKQQL
AQAQGYSEQAEQELSSALLQAGFSDVAALTAAQLSDGQQQQLTANIEQWQQQCHALAGQL
DALQQKLKDAIAPDLTALMTAVTAQQQLVQQADEQFQQINSRLSNLINCQQKLAADAKAL
AALESRFAVVGTLSDVANGNNQSKLSLQRFVLSVLLDDVLLEASERLARMSKGRYRLLRK
EERAKGNRASGLDLEVEDAYSGKVRPVATLSGGESFMAALSLALGLSNVVQAYAGGIKLD
TLFIDEGFGSLDQDSLELAIRTLIDLQASGRMIGVISHVTEMKEQILTRVDVLKQARGSV
IRLECA
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgaagccattacaactgaccatgacggcctttggcccgtttgcggataaacaggttatc
gactttcgcgaattggggcaaaacccactgtttttgattaatggcccaaccggtgccggc
aaaaccagtattctcgatgctatttgtttcgcgctttatggcaaaaccaccggcaatgag
cgtgaggcgccacaaatgcgctgcgactatgccgatgacagcctgatgaccacggtcgag
tttcaatttgaattaggcgaacgttgctatttgattaaacgcacgccagatcagcaacgc
ccgaaagcccgcggtgatggttacaccaatcaaagtgccgaagccaaattacagcggcta
ctgcccgatggcagtgctgaattgctggtggccagcagagtctctgaagcgactagcatg
gttgaagagttgaccgggctggatgtggatcagtttcgccaggtgatggtgttgccgcaa
ggcaagtttcgtgaactattgctggccgattctaaagcgcgggaaaagatttttagccag
ctgtttcaaaccagcatctatagccgtattgaagagcgattaaaggcgcaagccaaagca
atccgcgatgaagcccatgatttagagcagaaacgactggggatcctcgatactgcaggg
gtggaatcaaccgatgcgctgacaaatgccatcagtgaacttacgccactttgtgagcac
gccaaacagcaaaaaacgcaggccagtgccaagctggacgaggcaaataagcagttagat
gcaggtaaacgcctcaatagtgaactggcggagcaggcgcgggtggcgcaaagccttgag
caagccaaggcgcgtcaagccgagatggatcgcgtcaagcaacaactcaaattagcgcaa
atggcgcagcaagtgctgccggtttatcgccagcagcaacaacgcagtcgcgaacttatc
gcacagcaacaagcactgactgccgccgagcagcaactgagacacgctacgcaacaaaaa
cagcaagccgatagcgccgcacaacaactgcctgcgctggatcagcaattgcaattcagc
cgcagtgctcagcaacacgctgagcaattaaagccgttactggaaaattattatcagcag
caacagcaactggatcaggccaacactgagctgcagcgcgttattaaagcgcagcaaacg
gctgagcaacaactgcaacaactgcaagcaaagaaaacccagctcacgcaagcgatggcc
gaactgcaacagcacgctggccagctgtctgaactgcaacagcagcaatatcagtggcag
cgtcaatgtgagcaagggcagcaaattgtgggcttgcaacaacagcaacagcggcttaat
catcagttgacccaaaaagctgagcagggcaagcaggcgaaagcggcgcttgataccgca
gaagcccaattgactcagctcagaatacaatggcaccaagggcaggcggcactgttagca
cagcaacttggccccaatgtgccgtgccccgtatgtggcagtcagcagcatcctaatccg
gcgcacagtgagcttgaaattccgaccgaacagcaattagagcacgcccagcaacagctc
gacagcaaacgctcgatctgcgaaaccttgcgtagcgattaccgtagcttgcgcgatcaa
ctggcgggtttggagcaacagcttgtacctctgtttagtgcgctggtgcttgattaccaa
gcaccactgccgcttgacgaatggcagcaacaactcaccgcgactcaacagcaatttgcc
gccgcgcaacaggcgcagcaacagctgagcaaacaacagcagcagcttagcgcgttggag
cagcaattaactacgcagcaacagcaactcaatagtgcgcaacagcaggtggctgagcaa
caaagccactgcagcagtttagcgggggcgctaacagagaatcagcgtcgtctgcctgcc
gagttacaaaacctcaccgcggcagccgcgttggcgcaattgaccgatcaattgcagcaa
ttggctcagcaacaaagcgggctaacggcgcaaataaaccagatccaacaagcgcagcaa
caggcaacggctcagttagccacggcagaaagcgcccttgctgccagcaagcaacagtta
gcgcaagcacaaggctatagcgaacaagctgagcaagagctaagtagcgcattactacag
gccgggtttagcgatgtggccgcgttaacggctgcgcagctaagcgatggtcaacagcag
cagttgaccgccaatattgagcaatggcagcagcaatgtcatgccttggcagggcaactt
gatgcattgcagcaaaagctcaaagatgcaattgcgcccgaccttaccgcattaatgacg
gcagtcactgcacagcagcaactggtgcaacaagcagatgagcaatttcaacagatcaac
agtcgcttaagtaacttaatcaattgccagcaaaagttggccgccgatgccaaagcgtta
gccgctttggaaagccgttttgcggtagtgggcactttgtcagatgttgccaacggcaat
aaccaaagcaaactcagtttgcagcgctttgtgttgagcgtattgcttgatgacgtgctg
cttgaggcttcggagcgtttagcgcgtatgagcaaaggccgctatcgcttgctgcgcaaa
gaggaacgcgccaaaggtaaccgcgcctcagggctggatttagaagtggaagatgcctac
agcggcaaagtgcgccccgtggcgaccttgagtggtggtgaaagctttatggcggcgcta
tcgttggcattaggcttgagtaacgtggtgcaagcctacgctggcggcatcaaactcgac
accctgtttattgatgaagggtttggcagtctagaccaagactcgctagagttggcgatt
cgcaccttaattgatttgcaagccagtggccgcatgattggggtgatttctcatgtgacc
gaaatgaaagaacagatactgacccgcgttgatgtactgaaacaggcacgcggtagtgtc
atccgtttggaatgtgcttaa
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integrated database retrieval system
