Shewanella avicenniae: JYB87_11770
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Entry
JYB87_11770 CDS
T07845
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
savi
Shewanella avicenniae
Pathway
savi03030
DNA replication
savi03430
Mismatch repair
savi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB87_11770 (dnaE)
03430 Mismatch repair
JYB87_11770 (dnaE)
03440 Homologous recombination
JYB87_11770 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
savi03032
]
JYB87_11770 (dnaE)
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_11770 (dnaE)
Enzymes [BR:
savi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JYB87_11770 (dnaE)
DNA replication proteins [BR:
savi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JYB87_11770 (dnaE)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JYB87_11770 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
DUF655
Motif
Other DBs
NCBI-ProteinID:
QSX32444
LinkDB
All DBs
Position
complement(2677053..2680529)
Genome browser
AA seq
1158 aa
AA seq
DB search
MAEPRFIHLRVHSDFSMTDGLAKVKPILAKTVSEGMPAVAITDQNNMCGLVKFYSGCHDS
GIKPIIGLDLWVVVPGFEGEFCSLTAIAMTNEGYQNLTQLTSKSYLRGYVGDRAAIDQEW
LIEHGEGVILLSGGRDGDVGRALLKGNNQQAAELISFYQQHFPDRYYLELLRTGRPDEER
YLHLAVDAAAQFGLPVVATNQVVFLKQDDFEAHEIRVAIHDGFTLADPRRPKRYSDQQYF
KSEAEMCALFEDIPEALRNTVEIAKRCNVTVRLHEYFLPNFPTGDMSTADFLVHKSKQGL
EERLAFLFPDEAERLKQRPAYDERLDVELGVINQMGFPGYFLIVMEFIQWAKDHGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKMIPAEPGMTLEKAFAAEPA
LPEAYEADEEVRDLIDMCRKLEGVTRNSGKHAGGVVISPTTITDFSPLLCDSEGKNPVTQ
FDKGDVEYAGLVKFDFLGLRTLTIIEWALAMINPRLAREGKPPVDIAAIDVADAESFRML
KRYETTAVFQLESRGMKDLIKRLQPDNIEDMIALVALFRPGPLESGMVDDFIARKHGQAK
VAYPHPDFEHECLKEILEPTYGVIVYQEQVMQIAQALAGYTLGGADMLRRAMGKKKPEEM
AKQRDIFRSGAESQGVDPELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
EFMAAVMSADMDNTDKIVTLVDECDRMGLTIIPPDVNKGLFKFTVDDGQKIVYGIGAIKG
VGEGPVEAIIEARKSGPFKDMFDFCARVDLKKLNKRVIERLISAGALDGLGPHRASMMAT
LPEALRAADQHAKAAAIGQDDMFGLLNDDPTDAKQQFVDCAPWPDKIWLEGERETLGLYL
TGHPINQYLDELKQYTSARLKEVHPTERGKSIKVAGLVVATRVMTTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLIEQDRILICEGEVSFDDFSGGNRMTARNIIDMSEARNHFAS
AVELKLDAAKITPQWLQSLQQTVSPWRNGAVPLVIEYQQSHAQARFKMGDDWRINPSDEL
MLALETMLGSNRVRILFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcatcttcgtgtccacagtgatttttctatgactgatggc
ttggcaaaggtaaagcctatccttgccaaaactgtcagcgaaggcatgcccgcggttgcg
attactgaccaaaacaacatgtgtggtttggtgaagttttatagcggctgtcacgatagc
ggaataaaaccgatcataggtttggacttatgggtcgttgtccccggctttgaaggggag
ttttgcagtctaactgccatcgcgatgaccaatgagggttatcagaacctgacccaattg
acgagtaagtcttatcttcgaggctatgtaggcgaccgtgcggcgattgaccaagaatgg
ctcatcgagcacggtgaaggggtgattctactctccggtggccgtgatggagatgtgggg
cgagctctgcttaaaggcaacaatcaacaagcagctgaactgattagcttctatcagcaa
cattttcctgatcgttattatcttgaattgctgcgtactggccgccctgacgaagaacgt
tacctgcatttggcggtagacgctgcggcgcagttcggtttaccggttgttgccactaac
caagtggtatttttgaagcaagatgactttgaagcgcatgaaatccgggtggcaattcac
gatggttttacccttgctgatccgcgccgaccaaaaagatacagcgaccagcagtatttt
aaatctgaagctgaaatgtgtgcgctgtttgaggatattcctgaagcgttacgaaacacg
gtagagatagcaaaacgctgtaatgttaccgtgcgtttgcacgaatattttttgccaaac
tttcccaccggcgatatgtccacagccgacttcttggtacataaatccaagcaagggtta
gaggaacggttagcgtttttgtttccggatgaggcagagcgtttaaagcagcgtcctgct
tatgatgagcgtttagacgtcgaactcggtgtgattaaccagatgggattccccggttac
ttcctcattgtgatggagtttattcagtgggcgaaagaccatggcatccctgtaggccca
gggcgtggttctggtgcgggctcgttggtggcctatgcactaaaaattaccgacctcgat
ccactcgaatttgacctgctgttcgaacgttttttgaacccggagcgggtatcaatgccc
gacttcgacgttgacttctgtatggatcgccgcgacgaggtgatcgaccacgtggccgat
atgtatggccgggatgcggtatcgcagattattaccttcggtactatggccgctaaagcg
gtaattcgtgatgtgggacgggtgttagggcatccctatggttttgttgaccgtatttca
aaaatgatccctgctgagcccggtatgaccttggaaaaggcgtttgcagcagaacctgca
ctccctgaggcttatgaagccgatgaagaggtacgcgaccttatcgacatgtgccgtaag
ctcgaaggggtgactcgtaactcaggtaagcatgctggtggggtggttatctcgccaacc
actatcactgactttagcccgttactgtgtgattcagagggtaaaaacccggtaacccag
ttcgataaaggtgacgtggaatatgcggggctggtgaagtttgacttcctaggtttgcga
acactcaccatcattgagtgggcgttagctatgatcaacccacgcttagcgcgtgaaggt
aaaccgccggtggatattgcggcgattgatgtggctgatgcggaatcgttccgcatgctg
aagcgctatgaaaccaccgcggtgttccagcttgaatcgcgcgggatgaaagatctgatc
aagcgtctgcaacccgataacatcgaagatatgatcgcgttggtggctttgttccgtccg
ggtccgctggaatcgggcatggtggacgactttatcgcgcgtaaacacggtcaggcgaag
gtggcctatcctcatcctgattttgagcatgagtgtctaaaagagatcctcgagcccacc
tacggcgttattgtttaccaagaacaggtaatgcagattgcacaggcgctggcgggttat
actctcggtggcgcggatatgttgcgtcgcgcgatgggtaagaaaaagcctgaagagatg
gctaaacagcgggatattttccgcagtggtgctgagtcgcagggggttgatcctgagttg
gcgatgaaaatcttcgacttggtagagaaattcgcgggttacggctttaacaaatcacac
tcggcagcatacgccttagtgtcgtatcaaacgctgtggttgaaaacccattatccgtca
gagtttatggccgcggttatgtcggccgatatggacaataccgacaagatcgtgaccttg
gtggacgagtgcgatcgcatggggctcaccatcattccgccagacgttaacaaagggctg
tttaagttcaccgttgatgacgggcaaaagattgtttatggcatcggcgctatcaaaggg
gttggtgaagggccggtagaagcgattattgaagcgcgtaaatcgggaccattcaaagat
atgtttgatttctgcgcccgtgtcgatttgaaaaagctgaataagcgggtgattgaacgg
ctgatcagtgcgggggcgcttgatggtctagggccacatcgtgcctcgatgatggccacc
ttgccagaggcgttgagagccgccgaccaacatgcaaaagcagccgctattggtcaagac
gacatgtttggtttgctcaatgacgacccaactgacgctaagcagcagtttgttgattgc
gccccgtggccagacaaaatctggttggaaggggagcgagaaaccctcggcttatatttg
acgggccacccaattaatcaatatttagatgaactgaagcaatacactagtgcccgtttg
aaggaagtccatcctactgaacgcggtaaaagcatcaaggttgcgggtctcgttgtggcg
acacgggttatgaccaccaagcgcggctcaaaaatggggctgctaacgttagatgataag
agtgcgcgtcttgaagtgatgctgttcactgaagcgtttgagaaatttaaccacttgatt
gagcaagatcgcattctcatctgtgaaggtgaagtgagttttgacgatttctccggtggt
aatcgcatgaccgcgcgcaatattatcgatatgagtgaggcgcgcaatcactttgcctca
gcggttgaactcaaacttgatgccgccaaaattaccccgcagtggctgcaatctctgcaa
caaaccgtgtcgccatggcgtaatggcgctgtgccgctagtgattgaatatcagcaatcc
cacgcccaagcgcggtttaaaatgggcgatgactggcggattaacccatccgatgaattg
atgttggcgttagaaaccatgctcggcagtaaccgggtgcggatactatttgaatga
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