Shewanella avicenniae: JYB87_13005
Help
Entry
JYB87_13005 CDS
T07845
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
savi03000
]
JYB87_13005
Transcription factors [BR:
savi03000
]
Prokaryotic type
Helix-turn-helix
Other families
JYB87_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
GAF
AAA_5
HTH_50
PAS_9
AAA
HTH_29
GAF_2
PAS
Mg_chelatase
HTH_28
PAS_7
HTH_30
AAA_2
PAS_10
HTH_1
AAA_30
AAA_16
AAA_3
PAS_8
Motif
Other DBs
NCBI-ProteinID:
QSX32664
UniProt:
A0ABX7QMS6
LinkDB
All DBs
Position
complement(2925718..2927643)
Genome browser
AA seq
641 aa
AA seq
DB search
MILHSWQRCKDAVVSTELAQYYCIDQECLTTVLAKNRLLIEAATSTINNLLIYTQHANSH
IILADKHGVVLYAAGRNLTPIGSVLTEEMLGTNGVGTCLVEQKPIYVMGPEHYLRQLHHS
HCSAVPIFNARKELMGVMSLAVPRTSAHSHSLGMLEAAAATISKQLMLSELLQEQQTLME
VLNEGVLILDRHDRVYSINRYARNIFNVVSDVVGQPLAMVVAPDEALSTILASNKSCQDL
EVRGQRRDSRWVTLTCSVTMTAEGHKIISVRDNCRTRAITRRAIGAKATYTFDNILGQST
AINKAIFQARQVSQSDATALIWGESGTGKELIAQSIHNASRRAKGPFIVVNCGAIPRDLI
QSELFGYEAGAYTGALRGGAAGKFELADGGTIFLDEIGEMPLAAQVSLLRFLQEKEVVRV
GGQNRQVVDVRVITATNKNLSLAVQQQQFRADLFYRINVLAINVPPLRERTGDIEHLANA
FITHCANGLQQPAKALSHSALQRLTHYPWPGNVRELENVIERAINLSRSAVIEAEDIQLD
PTFVASMPNDVAARAALQPAAQPSVFASAVGSYSDKVLLSDIAPYFPASGQLQASEYDTI
IAALNATHGNLREAAKQLGISRSGLYNKVKRYQLAVETFRQ
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgattttacattcatggcagcgctgcaaagatgctgtagtatcaactgaactggcacaa
tattattgtattgatcaagagtgtttgactactgtattagcgaaaaatcgattactgata
gaagccgcgacatcaaccattaataacctattgatttacactcagcacgctaatagccat
atcattctagcggataaacatggtgtggtgctgtatgcagcaggtagaaatcttacgccg
ataggcagcgtactcacggaggaaatgcttggcaccaatggtgtgggtacttgcttagtg
gaacaaaagccgatctacgtcatggggccagaacattacctgcggcaacttcatcatagc
cattgctccgccgtgccgatttttaatgcgcgcaaggaattgatgggggtgatgagttta
gctgtacctagaacaagtgcacattcgcattcactgggaatgctagaggcagccgcagca
acgatttcaaagcagctaatgttgtcggagttactccaagaacagcaaaccttaatggaa
gtgctgaatgaaggggtgcttattcttgatcgtcacgaccgcgtctattcgattaatcgc
tatgcccgcaatatctttaatgtggtgagtgatgttgtgggccaaccactggcaatggtc
gttgcgcctgatgaagcactgagtacgatcttggccagcaataagagttgccaagatctc
gaggtgcgtggtcagcgacgagacagccgttgggttacgctcacttgctcagtaaccatg
actgcagaaggccataaaatcatttcggtgcgggataattgccgaactcgtgccattacc
cgtcgtgccatcggtgctaaggctacctatacttttgacaatatcctcggtcagtcaact
gcgatcaataaagcgatttttcaagccagacaagtcagccagagtgatgccacggcgctg
atttggggagaaagcgggacaggcaaagagttgattgcccaatcgattcacaacgccagt
cgccgtgccaaaggcccatttattgtggttaactgtggcgcgattccgcgggatctgatc
caaagtgaattatttggttatgaagctggtgcctacacgggcgcactacgtggcggcgcc
gcaggtaagttcgagttagccgatggcggcaccatctttcttgatgaaattggcgaaatg
ccgcttgctgcacaagttagcctgttacggtttctgcaagagaaagaggtggtacgcgtg
ggtggccaaaaccgccaagtggtcgatgttcgcgtcattaccgcgaccaataagaacctc
agcctggcggtgcaacaacagcagtttcgcgccgatctgttttaccgtatcaatgtgtta
gcgattaacgtgccgccactgcgtgaacgcacgggtgatattgaacacttagccaacgca
tttattacccattgcgccaacggcttgcagcaacccgcaaaagcactgtcgcacagcgcg
ctgcagcggttaacccactatccgtggccgggcaatgtgcgtgagctggaaaatgtgatt
gaacgggcaataaacctgtcgagatcggcagtcattgaggcggaagatattcagcttgat
ccgacgtttgtggcaagtatgccaaatgatgttgcagcacgcgcggctctgcaaccggca
gcgcaaccctcagtgtttgctagcgcggtagggtcatattcagacaaggtgctactttcc
gacatcgcgccgtattttcctgccagtggccaactgcaagcgagtgaatacgacaccatt
attgcggcattgaacgccactcacggcaatttacgcgaggcggccaagcaacttggtatt
tcccgcagcggcctctacaacaaggtaaaacgttatcaattagctgttgaaacgtttcgc
cagtaa
DBGET
integrated database retrieval system
