Shewanella avicenniae: JYB87_13065
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Entry
JYB87_13065 CDS
T07845
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
savi
Shewanella avicenniae
Pathway
savi00521
Streptomycin biosynthesis
savi00523
Polyketide sugar unit biosynthesis
savi00525
Acarbose and validamycin biosynthesis
savi00541
O-Antigen nucleotide sugar biosynthesis
savi01100
Metabolic pathways
savi01110
Biosynthesis of secondary metabolites
savi01250
Biosynthesis of nucleotide sugars
Module
savi_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
JYB87_13065 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
JYB87_13065 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
JYB87_13065 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
JYB87_13065 (rfbB)
00525 Acarbose and validamycin biosynthesis
JYB87_13065 (rfbB)
Enzymes [BR:
savi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
JYB87_13065 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
NAD_binding_4
Polysacc_synt_2
RmlD_sub_bind
3Beta_HSD
adh_short
DUF6532
Motif
Other DBs
NCBI-ProteinID:
QSX32675
LinkDB
All DBs
Position
complement(2948291..2949400)
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AA seq
369 aa
AA seq
DB search
MKRLLVTGAAGFIGANFVHYWLSQHADDRVVVLDALTYAGNLETLMPLMDKPNFRFVKGN
IGNTELVELLLREEQIDTLVHFAAESHVDRSITGPDAFVETNIIGTHSLLKAARSVWLAD
PANPLPHRFHHVSTDEVYGTLGANDPAFTEQTQYAPNSPYSASKAASDHLVRAYHHTYGL
NVTTSNCSNNYGYYHFPEKLIPLCLTNILEGKPLPIYGDGKQIRDWLFVEDHCRGIELVL
QKGVTGETYNIGGVNEWQNIDIVNLLCELMDGEFAADASLAERYPQSPCAQGKPANSLIT
YVKDRAGHDRRYAIDCSKIERELGFKPAETFETGVRKTVRWYLDNQSWVDNVKSGAYQTW
IDQQYTKRK
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagattacttgtcaccggtgctgctggctttatcggcgctaactttgtgcattac
tggttgtcacagcatgctgatgaccgtgtggtggtgctcgatgcattaacttatgcgggc
aacctcgaaacgctgatgccgctgatggataagccgaatttccggtttgtgaaaggcaac
atcggtaacaccgaactggttgaactgctgctgcgcgaagagcagattgacaccttagtg
cattttgctgctgagtcgcatgttgaccgttcaattactgggccggatgcctttgttgaa
accaatattattggcactcacagcctgctgaaggcagcgcgtagcgtgtggttagccgat
cctgctaatccattgccacaccgttttcatcatgtgtcgaccgatgaagtctacgggact
ttgggggccaatgatccggcgtttactgagcaaactcagtatgcgccgaattcgccgtat
tccgcttccaaagcggcgtcagatcatttggtgcgcgcctatcaccacacctatggcttg
aatgtcactaccagtaattgttccaacaactacggttattatcattttcctgaaaagttg
attccgctatgtttgactaacatccttgaaggtaagccattgccaatttatggtgatggt
aagcagatacgtgattggctgttcgtagaggatcactgccgtggtattgagctggtgctg
caaaaaggtgtcactggcgaaacctataacattggcggcgtgaatgaatggcagaacatc
gatattgtcaatttgctgtgtgagttgatggatggcgagtttgctgccgatgcgtcattg
gcagagcgttatccgcaatcgccttgtgcccaaggtaaacctgccaattcgctaatcacc
tatgtaaaagatcgtgcagggcatgatcgccgttatgcgattgattgctctaaaatcgaa
cgggaacttggctttaagccagcagaaacctttgaaaccggtgtgcgcaaaaccgtgcgt
tggtatttggataaccaatcttgggtagacaacgtaaaaagcggtgcctatcaaacctgg
attgaccagcaatatactaaacgtaagtaa
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