Shewanella avicenniae: JYB87_15670
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Entry
JYB87_15670 CDS
T07845
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
savi
Shewanella avicenniae
Pathway
savi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JYB87_15670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
savi03019
]
JYB87_15670
03009 Ribosome biogenesis [BR:
savi03009
]
JYB87_15670
Enzymes [BR:
savi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JYB87_15670
Messenger RNA biogenesis [BR:
savi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JYB87_15670
Ribosome biogenesis [BR:
savi03009
]
Prokaryotic type
rRNA helicases
JYB87_15670
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QSX33145
UniProt:
A0ABX7QQ89
LinkDB
All DBs
Position
3560121..3562010
Genome browser
AA seq
629 aa
AA seq
DB search
MSSELTFRELGLSEELLVALNELGYEHPTPIQAASIKPLIEGKDILGQAQTGTGKTGAFA
LPLLNAIKRDLNAPQILVLAPTRELAVQVAEAFSSYAKFIKGFHVLPIYGGQSMHQQLQA
LRRGAQVVVGTPGRVMDHMRRGTLKLDNLQSLVLDEADEMLKMGFIDDIEWILEHTPETR
QLALFSATMPEQIKRVANKHLNEPVNISIAASHTTVDSIEQRFVQVAQHNKLEALVRVLE
VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKSGKLDILIA
TDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTNREIRMLRTIE
RATNSRISPMKIPGPEVVAERRLSRLGEQIGSVINNEQLDFMQSAVGTLCSQLEIEIDTL
ASALLYLVQQERPLQPPAIQERVRDSRDSREGRDGRDGGSRGDDRNGDRKPRRARPTGDL
GIAEQLKDNPEIKMARYVIEVGRDHGVGVGNIVGAIANEANIDSRYIGQIQLLDQISTVD
LPTGMPKEVLAHLRGVRVCGRPINIREAGTEVEGASSSRRPRRDGGAPRRSEGRGEGRSS
EGRSEGRDGQRRERRSEGGERKPRRRDSK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctgaacttactttccgtgaactcggtttgtccgaggagcttttagttgcgctc
aacgagcttggctatgagcatccaacccctatccaagcagcgagtatcaaaccgctgatc
gagggcaaggatatccttggtcaagcccaaactggtaccggtaaaaccggtgcatttgcg
ttgccgttactgaacgcaatcaaacgtgacctcaacgccccgcagattctggttctggcg
ccaacgcgcgaacttgctgtacaagttgccgaagccttttccagctatgccaaatttatc
aaagggttccacgtactgcctatctatggcggtcaaagcatgcatcaacagttgcaagct
ctgcgtcgtggtgctcaggttgttgtaggtacacctggccgcgtgatggatcatatgcgt
cgcggcacgcttaaacttgataatctgcaatctttagtgctcgacgaagccgatgaaatg
ctcaaaatgggcttcatcgatgacattgaatggattcttgagcacaccccagaaactcgc
caattggcactgttttcagccaccatgcctgagcagatcaagcgtgtggcaaacaagcac
ctgaacgaaccagtcaatatcagtattgcggccagccacaccaccgttgattctatcgaa
caacgttttgtgcaagttgcgcaacacaacaaactggaagccttggtgcgcgtactggaa
gtggaaaacacggaaggtatcatcatcttcgtgcgtacccgtaactcatgtgtggaactg
gctgagaagctggaagcccgcggttacgccagttcaccactgcatggcgacatgaaccaa
caagcgcgtgaacgcgcagttgaacagctgaaatctggcaagctggatattctgattgcg
actgacgttgcagcgcgtggtttggacgttgaacgtattggccacgttatcaactacgat
attccatacgacaccgaagcctacgtacaccgtattggccgtactggccgtgctggccgt
accggtatggcgatcctgtttgtgactaaccgtgaaatacgcatgctgcgcaccatcgaa
cgcgccaccaacagccgtatttcgccaatgaagatcccaggtccagaagtggtggcagag
cgtcgtttgtctcgtttaggcgagcagatcggtagcgtcatcaacaatgaacagttggac
tttatgcaaagcgctgtgggcaccctgtgttcacaactggaaatcgaaatcgataccctg
gcttcagcactgctgtacttagtacaacaagagcgtccactgcaaccaccagcgatccaa
gaacgtgtgcgtgatagccgtgacagccgcgaaggtcgcgatggtcgtgatggcggttca
cgtggcgatgaccgtaacggtgatcgtaaaccacgtcgcgcccgcccaactggcgatctc
ggtattgctgaacagctaaaagacaacccagagatcaagatggcgcgctacgtgattgaa
gtgggtcgtgaccacggtgtaggtgtgggcaacattgttggcgcgattgctaacgaagcc
aacatcgacagccgttacatcggtcaaattcaattgctggatcagatcagtactgttgac
ctgcctactggcatgccaaaagaagtgttagcccacctgcgtggtgtgcgtgtatgtggt
cgcccaatcaatatccgtgaagcgggtactgaagttgaaggcgcttcatcatcacgtcgt
ccacgtcgtgacggcggcgcacctcgtcgcagtgaaggtcgtggtgaaggtcgcagcagc
gaaggccgtagcgaaggtcgtgatggccaacgccgtgaacgccgcagcgaaggtggcgaa
cgtaagccacgtcgtcgtgacagcaaataa
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