Shewanella avicenniae: JYB87_16340
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Entry
JYB87_16340 CDS
T07845
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
savi
Shewanella avicenniae
Pathway
savi03420
Nucleotide excision repair
savi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JYB87_16340 (uvrD)
03430 Mismatch repair
JYB87_16340 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_16340 (uvrD)
Enzymes [BR:
savi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JYB87_16340 (uvrD)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYB87_16340 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JYB87_16340 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
Motif
Other DBs
NCBI-ProteinID:
QSX33273
UniProt:
A0ABX7QP83
LinkDB
All DBs
Position
complement(3717995..3720163)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNEKQREAVGAPLSSMLVLAGAGSGKTRVLTHRIAWLMQVENQSPYSILAV
TFTNKAAREMRERVEKVVGHNMSRMWIGTFHGLAHRLLRTHWQDANLPQNFQILDGDDQY
RLIKRILKSLNLDEKHYPPRMVQNYICTQKDEGFRPKDIEAGPFPLEQKLKEVYQVYQEA
CDRAGLVDFSEILLRAYELWLYKPLILQHYRDRFQHILVDEFQDTNTIQYKWIQVLAGTT
AHVMIVGDDDQSIYGWRGAQVENLHKFLRDFPGAETIRLEQNYRSTGNILKAANELIANN
PGRLGKDLWTQDADGEPIAVYSAFNELDEARFIVGRISDWQDMGNDLSDCAILYRSNAQS
RVLEEALLHKGLPYKIYGGLRFFERQEIKDAMGYLRLMANHDDDAAFERVVNTPTRGIGD
RTLEILRTTARQHGITLWQTALQALDKKLLSGRAATAVQNFLDLVVTMARETEEMALYRM
VDHVSQASGLKTMYEQEKGEKAQSRVENLEELVTAARTFEVPEELLDMGELNAFLSHAAL
EAGEGQADANADAVQLMTLHTAKGLEFPVVFMAGVEEGLFPSQLTLEEGDRLEEERRLCY
VGMTRAMQQLYITYAESRRIYGRENYSRPSRFIKELPPECIREVRLKAQVSTPAFSTRFS
QSSNTQTGDSGFRHGARVRHFKFGEGTVVNSEGTGAQSRVQVNFDDFGSKWLVVAYAKLE
SV
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttacttgatggcctaaatgagaaacagcgcgaggcagttggtgcg
ccgctctccagcatgttggtgctggcgggggccggctcaggcaaaacgcgggtgttaact
catcgtattgcatggctgatgcaggtagagaaccaaagtccgtactcgattttggcggta
acttttaccaacaaagccgcgcgcgagatgcgcgagcgggtagagaaagtggtcggccac
aacatgagccggatgtggattggtacgttccacggcttagcgcaccgcttgctgcgcacc
cattggcaggacgccaacctaccgcaaaacttccaaattttggatggcgacgaccaatac
cggctgatcaaacgcatccttaaaagccttaatctggatgaaaaacactatccgccgcgg
atggtgcaaaactatatctgcactcaaaaagatgaaggctttcgcccgaaagatatcgaa
gcggggccgtttccgttagagcaaaagttaaaagaggtgtatcaggtttaccaagaggcg
tgcgaccgcgctgggttggtggacttctccgaaattctgctgcgtgcttatgagttgtgg
ttatacaagccgctgattttgcagcactaccgtgaccgctttcagcatattttggtggac
gagtttcaagataccaacactattcagtacaagtggattcaagtactagcgggcactact
gcccatgtgatgatcgtcggtgatgatgaccagtcgatttacggctggcgcggcgcgcag
gtagaaaacctgcacaaattcctgagagatttccccggtgctgagacgattcggttggag
caaaactaccgctccactggcaacattttgaaagctgccaacgagctgatcgccaacaac
cccggccgtttgggtaaagatctgtggactcaagatgccgatggcgaaccgatcgccgtt
tacagtgcctttaacgaactcgatgaagcgcgctttattgtcggccgaattagcgactgg
caagacatgggcaatgatcttagcgattgtgccattttgtatcgttctaacgcgcaatcg
cgggtattagaagaagccttattacacaaaggcttgccctacaaaatctacggtggtttg
cgcttcttcgagcggcaagagattaaagatgccatgggctatctgcgcttgatggccaat
catgatgatgatgccgcatttgagcgggtggtaaatacgcccactcgcggcattggcgat
cgcactttggaaattctgcgaacgacggcacggcagcacggcattacgctgtggcaaacc
gcattgcaggcgctcgataaaaaactgctcagtggccgcgccgcaaccgcggtgcaaaac
tttctcgatctggttgtgaccatggcgcgcgaaacggaagagatggcgctgtatcgcatg
gtggaccatgtgtcgcaagcctctggccttaagaccatgtacgagcaggaaaagggcgag
aaagcacaaagccgggtagaaaacttagaagagttagtgactgccgcgcgtacctttgaa
gtgccagaagagctgctcgatatgggcgagttgaacgcatttttatcccacgccgcgttg
gaagcgggcgaaggccaagccgatgccaacgctgacgcagtccagttgatgaccttgcac
actgccaaaggcttggagttcccggtagtgtttatggcgggggtagaagagggcttgttt
ccaagtcagttgacgctggaagagggcgatcgcttagaggaagaacggcgcttgtgttac
gtgggcatgacccgagcgatgcagcagttgtatatcacttatgccgaatcacggcggatt
tatggccgtgaaaactattcacgcccatcgcgttttattaaagaactgccgccagaatgt
attcgcgaagtgcgcttaaaagcccaagtcagtacaccagcgttcagtacccgttttagc
caatcaagcaacactcaaaccggtgatagtggctttagacatggtgccagagtgcgtcac
ttcaagtttggcgaaggaactgtggtcaatagtgagggcactggcgcacaatcgcgggta
caggtgaattttgacgacttcggcagtaaatggttggtggtggcctatgctaagttggag
tctgtgtag
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