Shewanella avicenniae: JYB87_17460
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Entry
JYB87_17460 CDS
T07845
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
savi
Shewanella avicenniae
Pathway
savi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JYB87_17460 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
savi03021
]
JYB87_17460 (rpoB)
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_17460 (rpoB)
Enzymes [BR:
savi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JYB87_17460 (rpoB)
Transcription machinery [BR:
savi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JYB87_17460 (rpoB)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JYB87_17460 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QSX33478
UniProt:
A0ABX7QRH2
LinkDB
All DBs
Position
complement(3947974..3952005)
Genome browser
AA seq
1343 aa
AA seq
DB search
MVYSYSEKKRIRKDFGKRPQVLDIPYLLAIQLDSFKKFTDQDPSGERGLEAAFRSVFPIK
SFSGNSELQYVSYKLGEPVFDVKECQIRGVTYSAPLRVKLRLVLFDREAAAGTVKDIKEQ
EVYMGDIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDALFVRIDRRRKLPATIILRALEYSTQEILDIFFDRVEFSIKKDSLQMK
LVPERLRGETASYDIKDSEGNLLVEKGRRITARHIRQLEKSNTTELEVPVDYIVGKTAAQ
DYIDPDTGEVLVTANNEISLEDLANLSLAGIKEISTLYINELDHGAYIADTLRIDSTTNR
MEALVEIYRMMRPGEPPTKDAAEALFHNLFFTEERYDLSKVGRMKFNRRLDIDENEGTGV
LTKEDIVAVMKKIIEIRNGFDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL
SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSTFARTNAYGFLETPYRKVVDGVV
TDEVDYLSAIEEGRYVIAQANIDLDENGRIIDEQVASRHKGESTFMRVSDVQYMDVSPQQ
VISVAASLIPFLEHDDANRALMGANMQRQAVPVLRAEKPLVGTGIERTLAVDSGVVVAAK
RGGVVDYVDASRIVVKVNEEELQPGEAGIDIYNLTKYTRSNQNTCINQRPCCQPGEPVVR
GDVLADGPSTDLGDLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCI
ARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNSVKGTVIDVQVFTRDGVEKDKRAVEIEEMHIAQARKD
LTEEFKILEEGVFDRARNLLLNAGFSEAKLAEMPRKDYLVQVIDDETKQTELEQLAEQHE
ELKADFDKKFDIKRRKITQGDDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKI
CPIEDMPYDENGNPVDIVLNPLGVPSRMNIGQVLEVHLGAAAKGIGDCIATLLEEQRGIA
ELRDYIKKVYALGEGIQQKVDIDSFSDEEVVRLAEHLKLGLPTATPAFDGAEESEIKAML
ELAGLPTSGQRTLYDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGM
PESFNVLLKEIRSLGINIELDQE
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctattccgaaaaaaagcgtattcgcaaagactttggtaagcgtccacaa
gtattggacatcccttacctgctggcaatccagttggattctttcaaaaagttcaccgat
caagatccatccggtgagcgaggcttggaagccgcgttccgcagcgttttcccaattaag
agcttctctggtaattctgaacttcaatatgttagctacaagctcggcgagcctgtattt
gacgttaaagaatgccaaatccgtggcgtgacatattcagctccgctgcgtgtaaaactg
cgtctggtattgtttgatcgcgaagctgccgcaggcaccgttaaagacatcaaagagcaa
gaagtttacatgggtgatatcccattgatgactgaaaacggtactttcgttatcaacggt
actgagcgtgtgatcgtatctcagttgcaccgttctccaggtgtattcttcgaccacgac
cgtggtaaaacccactcatcaggtaaagtactgtataacgcacgtattattccttaccgt
ggttcatggttggatttcgaattcgatcctaaagatgcgctgtttgtgcgtatcgaccgt
cgtcgtaagctgcctgctactatcattctgcgtgcgcttgaatactcaactcaagagatc
ctggatatcttcttcgatcgcgtagagttcagcatcaagaaagattcgctgcagatgaaa
ctggtgccagagcgtctgcgtggtgaaaccgccagttacgacatcaaagacagcgaaggc
aacctgttggttgaaaaaggccgtcgtatcactgctcgccatatccgtcagttggaaaaa
tccaacacgactgaactggaagtgccagtagattacatcgtcggtaaaaccgctgcacaa
gactatattgacccagatactggcgaagtgttagtgaccgctaacaacgaaatcagcctt
gaagatctggcgaacttgtcattggctggcatcaaagaaatcagcacgctgtatatcaac
gagttggatcacggtgcttacatcgctgacacattgcgtatcgactcaaccaccaaccgt
atggaagcgttggttgaaatctatcgcatgatgcgcccaggcgagccaccaaccaaagac
gcagccgaagcgctgttccataacctgttcttcactgaagagcgttatgacctgtctaaa
gtgggccgcatgaagttcaaccgtcgtctcgacattgacgagaacgaaggtactggcgta
ctgaccaaagaagatatcgttgccgtaatgaagaaaatcatcgaaatccgtaacggtttt
gatgaagttgacgatatcgaccacttgggtaaccgtcgtattcgctctgtaggcgaaatg
gctgaaaaccaattccgcgtaggtctggtacgtgttgagcgtgcagtacgtgaacgtctg
tctttgggcgacctgaacgaactgatgccacaagacctgattaacgctaagcctatctct
gcggcagtaaaagaattcttcggttcttcacagctgtctcagtttatggaccaaaacaac
ccgttgtcagaagtaacgcacaagcgtcgtatttctgcactgggcccaggtggtttgact
cgtgaacgcgcaggcttcgaagtccgcgacgtacacccaacacactacggtcgtttgtgt
ccaattgaaacccctgaaggtccaaacattggtttgatcaactcactgtctaccttcgca
cgtactaacgcttacggtttcttggaaactccataccgtaaagtggttgatggcgtggta
actgatgaagttgactacctgtctgccatcgaagaaggtcgttatgttatcgctcaggcg
aacatcgacttagacgaaaatggccgcatcatcgacgagcaagtagcaagccgtcataaa
ggtgaatctacctttatgcgcgtgtctgacgtgcaatatatggacgtttcgccacaacag
gttatctctgttgctgcgtcactgattccgttcttggaacacgacgacgcgaaccgtgca
ttgatgggtgcgaacatgcaacgtcaagcggtacctgtactgcgtgctgaaaaaccattg
gtaggtactggtattgaacgtacgctggcggttgactcaggcgtggtagtggctgcaaaa
cgtggtggtgttgttgattacgttgatgcaagccgtatcgtggttaaagtaaatgaagaa
gaactgcaaccaggtgaagcaggtatcgacatctacaacttgaccaagtacacccgttct
aaccaaaacacctgtattaaccagcgtccatgctgccaaccaggtgaaccagtagtgcgt
ggcgacgtattggctgatggcccatctaccgacttaggtgatttggcgctgggtcagaac
atgcgtatcgcgttcatgccttggaacggttacaacttcgaagactcgattttgatctct
gagcgcgttgcgcaagaagaccgttttaccaccatccacattcaagagttgtcatgtatc
gcacgtgacaccaagttgggtagcgaagagatcactgcagatattccaaacgtgggtgaa
tctgcactgtcgaagctggacgaatcaggcatcgtgtatatcggtgctgaagtgaaaggc
ggcgacattctggtaggtaaagtaacaccaaaaggtgaaactcagctgactccagaagaa
aaactgctgcgtgcaattttcggtgaaaaagcgtctgacgtaaaagacagctcactgcgc
gtacctaactctgtgaaaggtactgttatcgacgttcaggtatttacccgtgatggcgtt
gagaaagacaagcgtgcagttgaaatcgaagagatgcatatcgctcaagcacgtaaggac
ttgactgaagagttcaagatccttgaagaaggtgtgtttgaccgtgcacgtaacctgctg
ctgaatgctggtttcagtgaagctaagttggccgaaatgccacgtaaagactacttggta
caagtaatcgatgacgaaactaagcaaactgagctggaacagctggctgaacagcacgaa
gagctgaaagcagacttcgacaaaaaattcgacatcaaacgtcgcaagatcacccaaggt
gatgacttggctccaggcgtactgaagatcgtgaaggtttacctcgcggttaaacgtact
atccaacctggtgacaagatggcaggtcgtcacggtaacaagggtgttatctctaagatt
tgtccaatcgaagacatgccatacgatgaaaacggcaacccagtggatatcgtactgaac
ccactcggtgtaccttcacgtatgaacatcggtcaggtattggaagttcacctaggtgct
gctgctaaaggtatcggtgattgcatcgctactctgcttgaagagcaacgtggcattgct
gagctgcgcgattacatcaagaaagtgtacgcactgggtgaaggtattcagcagaaagtt
gacatcgactccttcagcgatgaagaagttgttcgtctggctgaacatctgaaactgggt
ctgcctactgcaaccccagcattcgatggtgctgaagagagcgaaatcaaagccatgctg
gaactggcaggtttgccaacttctggccagagaaccctgtatgacggccgtactggtaac
gcattcgaacgtaaagtgacagtgggttacatgtacatgctgaaactgaaccacttggta
gacgacaagatgcacgcgcgttctactggttcttacagcttggttactcagcagccgctt
ggtggtaaagcacagttcggtggtcagcgtttcggggagatggaagtgtgggcactggaa
gcatacggtgctgcatatactctgcaagaaatgctcacagttaagtcggacgacgtcaac
ggtcgtactcaaatgtacaagaacatcgttgatggcaaccaccagatgcaacctggtatg
cctgaatccttcaacgtattgctgaaggaaatccgttcactcggtatcaacatcgagctg
gaccaagagtaa
DBGET
integrated database retrieval system
