KEGG   Shewanella avicenniae: JYB87_17700
Entry
JYB87_17700       CDS       T07845                                 
Symbol
gspD
Name
(GenBank) type II secretion system secretin GspD
  KO
K02453  general secretion pathway protein D
Organism
savi  Shewanella avicenniae
Pathway
savi03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:savi00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    JYB87_17700 (gspD)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:savi02044]
    JYB87_17700 (gspD)
Secretion system [BR:savi02044]
 Type II secretion system
  General secretion pathway protein
   JYB87_17700 (gspD)
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0
Other DBs
NCBI-ProteinID: QSX33517
LinkDB
Position
complement(3999839..4001926)
AA seq 695 aa
MNNKRIRSKLIAGLVASAAMLVQQPLWAEQYAANFKGTEIQEFINIVGKNLNKTIIVDPT
IRGKINVRSYDMLNDEQYYQFFLNVLQVYGYAVVEMDNNVIKVVKDKDAKVANIRVADDS
TPGLGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVVNYDPSNVLMITGRAAVVNKL
VEIVKQVDKQGDVDVTVVKLNYASAGEIVRIVDNLYRNSANQQQLPGQAPKVVADERTNS
VVVSGDPRSRERAVELINRLDAEQASSGNTKVRYLKYAKAKDLVEVLTGFAKQLEDKANG
TATAGAAGGSTAKRRNEITVMAHEETNSLVLNAEPDQMRTLEDVINQLDIRRAQVLVEAI
IVEVAEGDSIGLGVQMGSLSGAMTQFNNVGSTIGEIGAGVWSARSEDGNSVTTIDSNGNP
VTTTNPTIDGDVTNLASALGNVSGAALGVVSGDFAALLQAVATDTNSNVLATPSITTLDN
QEASFIVGDEVPVLTGSQNSQNGNSNPFQTVERKEVGVKLKVVPQINEGNAVKLNIEQEV
SNVNGNTSVDVTFATRRLTTTVMADSGQIVVLGGLINEEVQESVQKVPLLGDIPVIGQLF
RSSNSRKTKRNLMIFIRPTIVRDGVTMEGIAGRKYNYFRALQLQQAERGVNLMPDTNVPV
LDEMDPNNFSPEVNEILERYKRGEGVGTNKQEGND
NT seq 2088 nt   +upstreamnt  +downstreamnt
atgaacaacaagcgcattcgttccaagctgatagccggtctcgtggcctcggcagcaatg
ctggtccaacaaccgctttgggctgaacagtacgccgccaattttaaaggcacagagatt
caggaatttatcaatattgttggtaaaaacctgaacaagaccatcatcgttgatccaacc
attcgcggcaaaatcaatgtgcgcagctatgacatgttgaacgatgagcagtattaccag
tttttcttaaacgtactgcaggtctatggctatgccgttgttgaaatggataacaacgtc
atcaaagtggtgaaagataaagacgccaaagtagccaacattcgcgtggctgatgacagc
accccaggccttggtgatgaaatggtgactcgtattgttgccttgtataacaccgaagct
aagcagctcgcgccgttactgcgtcagttgaacgataacgccggtggcggcaacgttgtt
aactacgatccatcaaacgtgctgatgattactggccgcgcagccgtagtgaacaaactg
gttgagatcgtcaagcaagtcgataaacaaggcgatgtcgatgtcaccgttgtgaagctg
aactatgcctcagccggtgagattgtgcgtattgttgataacctataccgcaatagcgcc
aaccaacaacagctgccgggccaagcgccaaaagtggtcgccgatgagcgtactaactcg
gtcgttgtcagtggtgaccctcgtagccgtgaacgcgctgttgagttaattaaccgtttg
gatgccgagcaagccagcagcggcaacaccaaagtgcgttacctgaaatacgctaaagca
aaagatttggttgaagtattaaccggctttgctaagcagttagaagataaagccaatggc
acggcaaccgccggtgctgcgggtggttcaacggcgaaacgtcgcaatgaaatcaccgtc
atggcccatgaagaaaccaactccttggtgttgaatgctgagcctgatcagatgcgcact
ctggaagatgtgattaaccagctggatattcgtcgcgcacaggtcttggtggaagccatc
atcgttgaagtggccgagggtgacagcataggtttaggcgtacagatgggctcactgtct
ggcgcgatgacacagtttaataacgtgggctcaaccatcggtgaaattggcgccggtgtg
tggagtgcgcgtagcgaagatggtaactcggtgacaaccattgatagcaatggtaaccca
gtgacaaccaccaacccgacaattgatggcgacgtgactaaccttgcttcagcattaggc
aatgtcagtggtgctgctttaggcgttgtgtctggtgactttgccgcactgctgcaagcg
gtggcaaccgataccaactccaacgtattggcaaccccttcgattaccacgctggataac
caagaagcctcatttattgtcggtgacgaagtgccggttttgaccggttcgcaaaactcg
caaaacggcaacagcaacccattccaaaccgttgaacgcaaagaagtgggtgtgaagcta
aaagtggtaccacagatcaacgaaggtaacgctgttaagctgaacatcgaacaagaagtg
tcgaacgtcaacggcaacaccagtgttgacgtgacctttgccactcgccgtttgaccacc
actgtgatggctgactctggccaaattgtggtactgggcgggttgatcaacgaagaagtg
caagaaagcgtacagaaggtgccattgctgggcgatattccggtgattgggcaactgttc
cgctcatcgaacagccgcaagaccaaacgtaacctgatgattttcatccgcccgaccatc
gtgcgtgatggggtcactatggaaggtattgccggccgtaaatacaactacttccgcgcc
ttgcagctgcaacaagctgagcgtggcgtgaatctgatgcctgataccaatgtccctgtg
ctggacgaaatggaccctaacaacttctcgccagaagtgaatgaaattctggaacgctat
aagcgtggcgaaggggtaggcactaacaagcaagaaggcaatgactga

DBGET integrated database retrieval system