Shewanella avicenniae: JYB87_18020
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Entry
JYB87_18020 CDS
T07845
Symbol
mutM
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
savi
Shewanella avicenniae
Pathway
savi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JYB87_18020 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_18020 (mutM)
Enzymes [BR:
savi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JYB87_18020 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JYB87_18020 (mutM)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JYB87_18020 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF1631
Motif
Other DBs
NCBI-ProteinID:
QSX33579
LinkDB
All DBs
Position
complement(4066354..4067169)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVEVTRQGVEPWLVGQQVTALIVRNPSLRWPVPDVAQQIVGQTIRAVRRRAKYLL
IDTDAGTTIVHLGMSGSLRIVHARTEIAKHDHIDLVLASGRIMRFNDPRRFGAWLWCELP
EQAHPLLAKLGPEPLSEAFNLDYLALALAGKSKAIKLCLMDNAIVVGVGNIYANEALFAT
GIHPQRPAGKLVHKQLAELVPAIKAILAQAITQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGQACDRCGCLLNEIRLGQRTTVFCPVCQPK
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtcgaagtgacccgccaaggggttgaaccttggttagtgggt
cagcaagtcaccgcattaattgtccgcaacccctcgttacgctggccagtgcctgacgta
gcgcagcagattgtcggtcaaactattcgcgccgtgcgtcgtcgcgccaaatatctactg
attgataccgatgccggtacgacgatcgtgcatttagggatgtctggcagtttacgcatt
gttcatgcgcgcactgagattgcgaaacacgatcatatcgacctcgtgctggcaagtggc
cgcattatgcgatttaacgatcctcgtcgctttggcgcttggttgtggtgtgaattgcca
gaacaagcccatccactgttagccaagcttgggcctgagccattaagtgaggcgtttaat
ctcgactatttagcactggctttagctggcaaatccaaggcgataaaactgtgcttgatg
gataacgcgattgtggttggcgtggggaatatctacgctaatgaggcgttatttgctact
ggcattcatccgcaacgcccagcgggtaagctggttcacaagcagttggctgaactcgtg
cccgcgataaaagcgattttggcacaggcgattactcaaggcggcactaccttaaaagac
tttaccaatgctgagggtaagccgggttactttgcccaaaaactgcatgtttatggtcgc
ggcgggcaagcgtgtgatcgctgtggttgtttgctcaatgagatccgcctagggcagcgc
accaccgtcttttgcccggtttgccaacctaaatga
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