Sulfobacillus acidophilus TPY: TPY_0316
Help
Entry
TPY_0316 CDS
T01576
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPY_0316 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
say03021
]
TPY_0316 (rpoC)
03400 DNA repair and recombination proteins [BR:
say03400
]
TPY_0316 (rpoC)
Enzymes [BR:
say01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPY_0316 (rpoC)
Transcription machinery [BR:
say03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPY_0316 (rpoC)
DNA repair and recombination proteins [BR:
say03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPY_0316 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
PA2201_N
Motif
Other DBs
NCBI-ProteinID:
AEJ38518
LinkDB
All DBs
Position
323417..326875
Genome browser
AA seq
1152 aa
AA seq
DB search
MLDVNNFDSMRIALASPEQIREWSKGEVKKPETINYRTLKPEREGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKVLYFAAYVVIEPGTTPLMKKQLLVESEYREHREKYGQHFRAMMGAEAIKELLL
EIDLDQLAEELREELNSSTGQRRIRAIRRLEVVEAFRQSGNRPEWMIIDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKE
MALELFKPFVMKKLVNEGYAHNIKSAKRMVERVRPEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMLSSQNIL
NPKDGRPVVTPTQDMVLGSYYLTMEMPGAKGEGMLLADLKEGEMAYQEGILDLHAKVTMR
YDGMRRQSTLGRFLFNDALPPALRFIDKVVDRKILGTLVADLFRMFGNQVTAEVLDRIKA
LGFSYATKAGITISVADINIPEEKRQILDEAEEQVTLVDRQYRRGLITADERYERVIEIW
TRAKERVTQALMDNMDPTNSVYMMATSGARGNVQQISQLAGMRGLMADPSGRIIELPIRA
NFREGLTVLEYFTSTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREIDCGTTEGTV
VREIKDGGQVIESFYERLVGRVAAETLVHPETGEVLVAPNEMITEEVAQSIIDAGLTEAT
VRSVLTCQSRYGVCVACYGRNLATGDIVEVGEAVGIIAAQSIGEPGTQLTMRTFHMGGVA
GDDITQGLPRVEELFEARKPKGQAIIAEISGTVHLGENKGRREITITADNGADAQVYVVP
FGSRLKVHEGETVHEGQELTEGSVNPHDLLRVMGPRGVQEYLLHEVQRVYRVQGVDINDK
HIEVMVRQMMRKIKVDESGDTNLLPGALVDRFEFEDENARVLAQGGSPAVAKPVVLGITK
ASLATDSFLSAASFQETTRVLTEASIKGKRDPLLGLKENVIIGKLVPAGTGMSRYRNVSV
LANAEQDQELYQ
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgctggatgtgaataattttgattccatgcgaattgcgctggcttcgccggagcaaatt
cgcgagtggtccaaaggcgaggtaaagaagccggaaacaatcaactaccgcacattaaaa
ccggagcgggaagggcttttctgcgagaaaatctttgggccgaccaaagactgggaatgt
cattgcggtaaatataaacgcgtccgctataaaggggtggtttgtgaccgctgtggtgtg
gaggtcacccgctccaaagtgcggcgtgaacggatgggccacatcgaattggccgctccg
gtctcccacatttggtatttcaagggcattccgtctcgcatgggcttgttgctggacatg
tctccgcgggcgttggaaaaggtgctctattttgcggcatatgtggtgattgagccgggc
accacgcctttgatgaagaagcagcttttggtcgaatccgaataccgtgagcaccgggaa
aaatacggtcagcattttcgcgcgatgatgggcgccgaggcgattaaggagctgttgctg
gaaatcgacctcgaccaattggcggaggaactgcgcgaagaactcaactcctcaaccggg
caacggcggattcgcgccatccggcggctggaagtggtcgaagcgttccgccaatccggc
aatcggcccgaatggatgattattgacgtcatcccggtcatcccccccgacttgcgtccg
atggtgcaattggacgggggacggtttgccacatcggacttgaacgatctctatcgccgg
gtcattaaccggaataatcgactcaagcggctattggatttaggggcccccgacattatc
gttcgcaacgaaaagcgcatgctccaagaagccgtcgacgcgttaattgacaacggccga
cgcggccgaccggtgaccggaccgggcaaccgccccttaaaatccttgtcggatatgttg
aaaggtaaacaaggccggttccgtcaaaacttactgggtaagcgcgtcgactactccggg
cgttccgtgattgtggtgggacccaaattgaaaatgcaccagtgtgggttgcccaaggaa
atggcgttggagttgttcaagccctttgtgatgaaaaaactggtgaacgaaggctatgcc
cataacattaagtcggcgaaacgcatggtggagcgggtgcgcccggaagtttgggacgtg
ttggaagacgtgattcgagaacatccggtccttctcaaccgggcacctaccttgcaccgg
ctcggcattcaagcgtttgagccggtgttggtggaaggccgggccattcagattcacccc
ttggtctgtacggcctataacgccgacttcgacggcgaccaaatggcggtgcacgtcccg
ctttcggcggaagcgcaggccgaagcgcgggtgttaatgttgtcgtcccagaacatttta
aatccgaaagacgggcgaccggtggtgacgccgacacaggatatggtgttggggtcctat
tatctgacgatggaaatgcccggcgccaagggtgagggcatgttgctggccgacttaaag
gaaggcgaaatggcctaccaggaaggcatcctggatttgcatgccaaggtgacgatgcgc
tatgacggcatgcgtcggcagtcgacgttagggcggtttctctttaatgatgcgttgcct
ccggcgttgcggttcattgacaaggtggttgaccgaaagattctcgggactttggtggcg
gatttattccggatgttcggcaaccaagtgacggcggaagtacttgaccgcatcaaggcc
ctgggattttcctatgccaccaaagccggcatcaccatttccgtagccgatatcaacatc
ccggaagaaaaacggcagatattggacgaggcggaagagcaagtgaccttggtcgatcgc
caataccggcgcgggttaatcacggcggacgagcgctatgagcgcgtgattgaaatttgg
acgcgggccaaagagcgggttactcaagcgctcatggacaacatggatcccaccaactcg
gtgtatatgatggcgacatcgggagcccgaggaaacgtgcaacaaattagccagctggcg
ggcatgcggggattgatggccgacccgtccggccgcattatcgagttgccgattcgcgcg
aacttccgggaaggcctgacggtgttggaatacttcacgtcaacccatggcgcacgtaaa
gggttagccgacacggcgctcagaacggccgactcggggtatttgacccgacgcttggtg
gatgtcgcgcaagacgtgattgtccgggagatcgactgtgggaccacggaaggcaccgtc
gtacgggaaatcaaggacggcggccaggtcatcgagtcgttctacgagcggctggtcggc
cgggtggcggccgagacactggtccacccggaaaccggggaggtgctggtggctcccaat
gaaatgattaccgaggaagtggcccagtcgattatcgacgcgggattgacggaagcgacg
gtccggagtgtcctcacctgccaatcgcgttatggggtctgtgtggcgtgttatggacgg
aacttggccaccggggacattgtggaggtcggcgaggcggtagggattatcgcggcccag
tcgattggtgaacccggcacacagctgaccatgcggacctttcacatggggggcgtggcc
ggagacgatattacccaagggttaccgcgtgtggaagaactgtttgaggcccggaaaccc
aaggggcaggctatcatcgccgaaatctcggggacggtgcatttaggggaaaacaaaggg
cgtcgggaaatcaccatcaccgccgacaacggggccgacgcccaggtgtatgtcgttccg
ttcgggtcgcgcttgaaagtgcacgaaggcgaaacggtgcacgaagggcaggaactgacc
gagggctcggtgaatccgcacgatctgttgcgggtcatgggaccgcggggggtgcaagag
tatttgctccacgaagtgcagcgcgtgtaccgggtccaaggtgtggatatcaacgacaag
cacattgaggtgatggtgcgccaaatgatgcggaagattaaagtggatgaatcgggcgac
accaacctcttgcccggtgccctggtcgaccgattcgagtttgaagacgaaaatgcccgg
gtactggcccaaggcgggtcgccggcggtggccaaaccggtggtgctcgggattaccaaa
gcctccttggccaccgattcgttcctctctgccgcgtcgttccaggaaaccacgcgggta
ctgaccgaagcttcgatcaaagggaagcgggatccgttgctcggattaaaagaaaacgtc
attatcgggaaattggtcccggccggcaccggaatgtcgcgctatcgaaatgtgagtgtc
ttggccaacgccgaacaggaccaggaactctatcaataa
DBGET
integrated database retrieval system
