Sulfobacillus acidophilus TPY: TPY_0398
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Entry
TPY_0398 CDS
T01576
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPY_0398 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
say03019
]
TPY_0398 (recQ)
03400 DNA repair and recombination proteins [BR:
say03400
]
TPY_0398 (recQ)
Enzymes [BR:
say01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPY_0398 (recQ)
Messenger RNA biogenesis [BR:
say03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPY_0398 (recQ)
DNA repair and recombination proteins [BR:
say03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TPY_0398 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
Helicase_C
ResIII
HTH_40
RecQ_Zn_bind
HTH_23
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEJ38600
LinkDB
All DBs
Position
383609..385696
Genome browser
AA seq
695 aa
AA seq
DB search
MSLTTFDARQWARINGVLTRVFGLTALRPGQADVIARVLQGRSVLAVMPTGAGKSLTYQL
PSLLMARPVLVISPLVALMQEQVASLRTLGILAEALTGPLSEETWSTMSEKWRTGQTRLW
FVAPERLFQARVFRLLRAYPPSFMAVDEAHCISQWGYDFRPEYRQIGKFRHQIGNPPVLA
LTATAPPVVQREIEWHLRDKGEPFDILTQPVDRPNIALDVQEVGTGAEKLHRVERLLAEE
PGAAILYASTRRATEWWADRLSERLTVPVVAYHAGLPRETRAAAEQAFRRRQVNRVVATS
AFGMGIDRGDIRLIVHVDLPESLDAYYQAVGRAGRDGEAARAVLVYRSADLVHRRHLADR
GLVDRASLETLLQAIQKRSVVTVPEDPEGTVPLILAMLEDLGWIFWRPVSGGWRVIRRQW
PTEDAVSVVWGRIDALRAWRQEQARHMIHYVQESNCRRDTLLAYYRSPRIPDSRFSCCDR
CRGGDRQRSFETVRERLAAWRQAVGRQQGVSPYVVMPESLMNQLVLRQPRTPAQLAEIPG
MGPKRLRQWGDEVLRLIRESSPSASNFSLTDADDGESQAFWLFATGLPPNEVAERIHRRP
STVRQYYVRWIAGRPPAEWRWTLIHWFSHEEYRQLKASFERWGADRLRPVYDEWQGRFDW
GQIEVARAVWQYETTHGESVFREPVPPTRPTRPRR
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctgaccacgtttgatgctcgccaatgggcgcgtatcaacggggttttaacccgt
gtgtttggtttaacggccttacggccggggcaagccgacgtcattgcgcgggtccttcaa
ggccgttcggtgttggcggtgatgccgacaggggccggcaaatcgctgacttaccaactt
cccagccttttgatggcgcggccggtcttggtcatttcgccgttggttgcgctcatgcag
gagcaggtcgccagcctccgaacgttggggattctggccgaggccctgaccggtccgctc
tcggaggagacgtggtcgactatgagcgaaaagtggcgaacgggtcaaacccgcttatgg
tttgttgctcccgaacggctttttcaagcccgtgtatttcggttgctacgggcgtatcct
ccgagttttatggcggtcgatgaagcgcattgcatttcgcagtggggctatgattttcga
ccggaataccggcaaatcgggaagtttcggcatcaaatcggtaatccgccggtattggcg
ttgacggccaccgcgcccccggtggtccagcgggaaatcgaatggcacttacgggataag
ggggagcctttcgatattttgacccagccggttgaccggccgaatattgccttggatgtg
caggaagtgggtacgggggcggaaaaacttcaccgggtggaacgtcttctggcggaggaa
ccgggagccgccattctctatgcgtcgacccggcgggccaccgaatggtgggccgatcgg
ctgagcgaacggctgaccgtgccggtggtcgcctatcacgcggggctgccccgggagacg
cgggccgcagcggaacaggcctttcgacgtcgtcaagtcaatcgggtggtggccaccagt
gccttcggcatgggcattgatcggggggatatccgcctaattgtccatgttgatttgccg
gaatctctcgacgcctattaccaagccgtagggcgggcgggtcgagatggggaggcggcc
cgggcagtgctggtctatcggtccgcggatctggtccatcggcggcatctggccgacagg
ggattggttgatcgggcttcgttggagactttattgcaagcgattcaaaaacggtcggtg
gtgaccgtgccggaagatccggagggtacggttcccttaatcttagccatgttagaggat
ctcggctggatcttttggcggcccgtatcgggtggctggcgggtcatccgccgtcaatgg
ccgaccgaggatgcggtgtccgtggtatgggggcggatcgacgccttgcgcgcttggcga
caagagcaggcccggcacatgattcactacgtgcaagaatccaattgccggcgggacacc
ctactcgcctattaccgatcaccccgtataccggactcccggtttagctgttgtgatcgc
tgtcgagggggggatcgtcaacggtcgtttgaaacggtgcgcgaacgtctggccgcctgg
cgccaggcggtgggccgacaacagggcgtttcgccatacgtcgtgatgccggaatcctta
atgaaccagttggtcctccggcaaccgcggacgccggcgcaattggccgagattcccggc
atgggtcctaagcggcttcggcagtggggcgacgaggttctccgtctgattcgggagagt
agcccatcggcttctaacttctctttgaccgatgccgacgacggcgaaagccaggccttt
tggctatttgccaccgggttgccgccgaacgaggtggccgaacggattcaccgacgtccg
agcacggtgcgtcaatattacgtccggtggatagccggccgcccgccggcggaatggcgc
tggacgcttattcactggttttctcatgaagaataccggcagctgaaagcgtcttttgag
cggtggggcgccgaccgtttgcgaccggtttacgatgaatggcaagggcgcttcgattgg
ggtcaaatcgaggtggcccgtgccgtctggcaatatgaaacgacccacggcgaatcggtc
ttcagggagcccgtcccaccaacgagaccaaccagaccccgacgctaa
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