Sulfobacillus acidophilus TPY: TPY_1657
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Entry
TPY_1657 CDS
T01576
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TPY_1657 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
say03019
]
TPY_1657 (deaD)
03009 Ribosome biogenesis [BR:
say03009
]
TPY_1657 (deaD)
Enzymes [BR:
say01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TPY_1657 (deaD)
Messenger RNA biogenesis [BR:
say03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TPY_1657 (deaD)
Ribosome biogenesis [BR:
say03009
]
Prokaryotic type
rRNA helicases
TPY_1657 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_19
AAA_30
Helicase_RecD
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEJ39838
LinkDB
All DBs
Position
complement(1555049..1556626)
Genome browser
AA seq
525 aa
AA seq
DB search
MEQQELSFKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAF
GIPIVERLDHRSKRVEALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIRA
LEHGAQVVIGTPGRVMDHIRRGTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPENR
QTLLFSATVPDPIAKLARRYLKDPVHVNISPERLTVPSIEQVFYEVREFEKLDALTRILD
MEEAERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEILVA
TDVAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAGRTGTAISLINPKEFRQLRQME
RVLRVRLQRRPLPTPADVAEKQREMLKNRLAEEIQRGVLPSYQELVMQLAEEYDSVDIAA
AAIRLMVDKGREDKSDLDFGETGAEPGMVRMFMNLGRMDRVTPADIVRGLAEGAGIQGSV
IGLIDIYDRFTFVEIPKDAAHKVLQNVGAIVIRGKSVNLEPARPR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
gtggaacaacaagaattgtcattcaaagcgatggggcttagcagttccgtcatcaaggcc
ttagaagagatgggcttcgaagagccgtcacccatccaggccaaaaccatcccgattatt
ctcgagggacatgatttaattggtcaggcgcaaaccggtaccggcaaaacagccgctttc
ggcattccgattgtcgaacggctcgaccaccgatcgaaacgggtggaagccctggttttg
gcccccacacgggaattagcgattcaggtagccgaagaaatcaccaaaatcggcaagttc
tccggcattaaagtcgtcccgatctatggcgggcagtcctatgaccgccaaatccgggcg
ctggaacatggtgcccaagtcgtgattgggacgccgggccgggtgatggaccatattcgt
cggggcaccctgaaactggaccatgtccaaatgatggtgctcgacgaagccgatgaaatg
ttggacatgggctttatcgaagatatcgagttcattttgaaaaacgtgccggaaaatcgt
caaaccctgcttttctcggccaccgtcccggatccgattgccaaactggcccggcggtat
ttgaaagatccggttcatgtcaatattagccccgagcggctgaccgtgccgtccattgaa
caagtgttctacgaagtgcgcgaatttgagaaactggatgccctcacccgcattttagac
atggaagaagcggaacgcaccatcattttctgccggaccaaaaaacgcgtggatgagctg
acagaaggactccaagctcgcggatataccgccgaggcgttacacggcgatctcaaccag
gtccagcgcaatcgcgtcatgaagcggtttaaggaaggcggcagcgaaattttggtcgct
accgacgtggccgcccgtgggctggacatcgacaatgtcactcacgtcataaactatgac
ctgccacaagataccgaaagctatgttcaccggattggccgaaccggccgcgccgggcga
accggcacggccatttcgctcattaatccgaaagagtttcgccagctccgacaaatggaa
cgggtccttcgcgttcggctgcagcggcgaccgttgccgaccccggccgatgtcgccgaa
aagcagcgggaaatgttgaagaatcggctggcggaagagattcaacgaggggtattgccg
agttatcaggaattggtgatgcaattagccgaggaatatgattcggtcgatattgccgcc
gctgccatccgcctcatggtggacaagggccgggaggacaaatccgatctggactttggg
gaaaccggcgccgaacccggcatggtccgaatgtttatgaatttaggccggatggaccgt
gtgacacccgccgatattgtgcggggattagccgaaggggccggcattcaaggcagtgtc
atcggtttaatcgacatttatgatcgctttacctttgtcgaaatccccaaggatgcggcc
cacaaggttctgcaaaatgtcggcgccatcgtcatccggggtaagagcgtaaacctggag
ccggcgcgcccccgctaa
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