Shewanella amazonensis: Sama_0419
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Entry
Sama_0419 CDS
T00445
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
saz
Shewanella amazonensis
Pathway
saz03420
Nucleotide excision repair
saz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sama_0419
03430 Mismatch repair
Sama_0419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_0419
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sama_0419
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sama_0419
MMR (mismatch excision repair)
Other MMR factors
Sama_0419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_22
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABL98629
UniProt:
A1S2M3
LinkDB
All DBs
Position
515732..517897
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSFLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAV
TFTNKAAAEMRERVEKIVGHNTGRMWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQ
RLLKRILKSMNLDEKQYPPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLLELYRIYQDS
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNT
ANVMIVGDDDQSIYGWRGAQIENLHRFLQDFPGAKTIRLEQNYRSTGNILKASNELIANN
PDRMGKELWTEDKDGEPISLYCAFNEMDEARFIVGRISDWQDKGGMLGECAILYRSNAQS
RVLEEALLHKGMPYRIYGGLRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIGE
RTLDILRSTARKEQLTLWQTSLRLLEEKVLSGRAANAVKGFLDLIVQLRSDTDELPLYRV
ADHVIQHSGLKAMYEAEKGENAQARVENLEELVTAARSFEMPEELEDMGELNAFLSHAAL
EAGEGQADAHTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSKLALEEGDRLEEERRLCY
VGMTRAMQKLYITYAESRRIYGREDYARPSRFIREIPPEYVEEIRLKAQVSAPLVANRFA
HAQQTFNDSGLKIGGRVRHFKFGEGTVTNYEGSGPQARVQVQFDDFGSKWLVVSYAKLES
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttttttgctggatggcctgaacgataagcagcgcgaagccgtggctgca
ccccagtccagcatgctggtgttggccggtgccggcagtggcaagacccgggtgttaacc
caccgaatcgcctggctgttgcaggtggagaaccagagtccctattcgatattggcggta
accttcaccaacaaggccgcggccgaaatgcgtgagcgggtcgaaaaaatcgttggtcac
aataccggtcgcatgtggataggtactttccacggcctggcccatcgcctgctgcgcacc
cactggcaggacgcaggtctgccacaaagtttccagatcatggactcagacgatcagcag
cgtctgctgaaacgcattctcaagagcatgaatctggatgaaaaacagtatccaccgcgt
ctggttgccgggtatatcaacggcaaaaaagatcagggactgcgcccagcccatatagac
gcaggtccattccctatggagcaaaagctgctggaactgtaccgtatctatcaggacagt
tgtgaccgggctggcttggtggactttgctgaaatcctgctgcgtgcccatgagctttgg
ctcaataaaccccatctgctggcccactatcaggacagattccgccatattctggtggac
gagtttcaggataccaacgccattcagtacgcctggatccgggtgctggccggcaacacg
gcaaatgtgatgattgtgggggatgatgaccagtcgatttatggctggcgcggcgcccag
attgaaaacctgcatcgctttttgcaggacttccccggcgccaagaccatacgcctggag
caaaattaccgctccaccggcaatattctcaaggcctccaacgaacttatcgccaacaac
cccgaccgtatgggcaaggagttgtggaccgaagacaaggatggcgagccaatctccctc
tactgcgcctttaacgagatggacgaggcccgctttattgtcggccgcatcagcgactgg
caggacaagggcggcatgctcggtgagtgcgccattctgtaccgttccaacgcccagtca
cgggtgctggaagaggccttgctccacaagggaatgccctatcgtatctatggtggcctg
cgcttcttcgaacggcaggaaatcaaggatgccatgggctatctgcgccttatctccaac
cgcgacgacgatgctgcttttgagcgtgtggtcaatacgccggcccgaggcataggtgag
cgaaccctggatattttgcgcagtaccgcccgcaaagagcagctgaccctgtggcagacc
tcgctgcgtctgctcgaggaaaaggtgctgtcgggccgcgctgccaatgcggtgaaaggc
tttttggatttgatagtccagcttcgaagcgacaccgacgagttgccgctctaccgcgtg
gcagatcatgtgattcagcactcagggcttaaggccatgtacgaggccgaaaagggcgaa
aacgctcaggcccgggtagaaaaccttgaggaactggtcacggccgcccgcagctttgag
atgccggaagagctggaagacatgggcgaactcaatgcctttttgtcccatgcggcactg
gaggcgggggaaggtcaggccgatgcccacacagatgctgtgcaactgatgacgctgcac
tccgccaagggactggaattccccatggtgtttatggccggggtggaagaaggcatattc
cccagtaagctggctctggaggagggcgaccgcctcgaagaggagcgccgcctgtgctat
gtgggtatgacccgggcaatgcaaaagctttatatcacctatgccgagtcacgccgtatc
tatggccgcgaagactatgccagaccctcgcgctttatccgcgaaattccccccgagtat
gtggaagagattcgccttaaagcccaggtctcggcgccactggtggccaatcgttttgcc
catgcacagcaaacctttaatgattccggcttaaagattggcggccgggtacggcacttt
aagtttggtgaaggcactgtcaccaactacgagggcagtggcccccaggcgagggtacag
gtgcagtttgacgatttcggcagcaaatggctggtggtcagctacgccaagctggaatcc
ctgtga
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