Shewanella amazonensis: Sama_0449
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Entry
Sama_0449 CDS
T00445
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_0449
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sama_0449
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
DUF4131
Motif
Other DBs
NCBI-ProteinID:
ABL98659
UniProt:
A1S2Q3
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All DBs
Position
554989..556896
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AA seq
635 aa
AA seq
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MQLTRMLTKKLISFWMMSLAAVAFVFLLSALMSFVQLTYRFQQQKVAELETMLVNHYQHQ
SSWELDSWLPPMLLAYNTVSFRLTRGDELVFEYQGNLGSDQTVVYERALYANDALEMRLE
LPRPFSAHRLGWRELMILLVGIVAVAGFVRFGFLWFSAELEGIEALAQRSKLILDGKLDE
AAKTPGNGKPRLINRALSRLLAELADAHKERARFDKFIRSNTFLDPQTRIGNRLFLQNRL
NALSSDQGMLAPGVLYLLEMEDLDILQQEAGDEVVLELLHSTINAINLVLQTQANSIFAR
RSHNQLAIVVPQISLVEADALADKLLKICLAQPLPKIEEADNFFHLGGAYFKEGDMPEPL
LDEADMALRAAQLQGASGWFMYDKGAVDQEFAKGSVRWRSFLENALVNRNFVTFAQPVCE
GDGSHHHHEIFTRVRDPMGSLVRATLFIPMAVKCGLMPQIERQVVERTLFELMSDTGTAK
RHYSINLSVDSLTSRAFVRWLQTTLLEYRHLASRLVFEVTEDMVMKHRSQLEPKLNMLRK
MGSRICVDHVGQQVVSTQYIRELGFNFIKLHRSVVRQIDLRPENQLFVRSLIGSLYRTDV
QVFAEGVGSFEEWQTLQILGVSAGQGTYFGDPQQI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgactcgcatgctgaccaaaaaactcatcagcttctggatgatgtcgctggcg
gcagtcgcttttgtgtttttgctcagcgccctgatgagttttgtacagctgacctaccgc
tttcaacagcaaaaggtcgccgagctggaaaccatgttggttaaccattatcagcaccag
agcagttgggagctggatagctggttgccgcccatgctgctggcctataacacagtgagt
ttccgtttaacccggggagatgaactggtatttgaatatcagggcaatctgggttcggat
cagactgtagtttacgagcgtgccctctatgccaatgatgcgctcgagatgcgactggag
cttccccgtccgttttcggcccacagacttggttggcgtgagctgatgattctgctggta
ggtatagtggcggtagcagggtttgttcgcttcggattcctgtggttttctgccgagctt
gaaggcatagaggcgctggcgcagcgcagtaaacttattctcgatggcaagctggatgag
gcggccaaaaccccggggaacggtaaaccacgactaatcaatcgtgcgctctcaagactg
cttgctgaacttgccgatgcccacaaagagcgggcccgcttcgataaatttattcgctcc
aatacctttctcgatccccaaacccggataggaaacaggctgtttttacagaaccgtctc
aacgctctctcaagcgaccagggaatgctggcacccggtgtcttgtatctgcttgaaatg
gaggatctggatattttgcagcaggaggctggcgatgaagtggtgcttgagctgctccac
agcaccatcaatgccataaacctggtgctgcaaacccaggccaacagtatttttgcccgc
cgctcccataatcagctggctatcgtagtgccgcaaatctccctggtggaggccgatgcc
cttgctgataaattgctgaaaatttgtctggcgcagccgctgccgaaaattgaagaagcc
gataactttttccatctggggggcgcttactttaaagagggcgacatgcctgaacccttg
ctggacgaggctgacatggctctgcgcgctgcgcagctgcagggtgccagtggctggttt
atgtatgacaagggcgctgtggatcaagagtttgccaagggctcagtacgctggcgctct
tttcttgaaaatgctctggttaaccgaaatttcgttacttttgcccagcctgtgtgcgaa
ggcgatggcagtcatcatcaccatgaaatttttacccgggtgcgggaccccatgggtagc
ctggtcagggcgactctgtttatccccatggcggtgaaatgtggcctgatgccgcaaatc
gagcggcaggtggtggagcgaaccctgtttgagctgatgtcagataccggcactgccaag
cgacattacagcatcaacctgagtgtggattcccttaccagccgtgcctttgtgcgctgg
ctgcaaaccaccttgctcgaataccgtcatctggcatcccggctggtgtttgaggttacc
gaagatatggtgatgaagcaccgaagtcagcttgagcccaagcttaatatgctgcgtaaa
atgggcagccgtatctgtgtggaccatgttgggcagcaggtagtcagcactcagtatatc
cgtgagttgggttttaactttatcaagctgcaccgctcagtggtccgtcaaatagattta
cgccccgagaatcagctgtttgtccgcagtctaatcggcagtttgtaccgcaccgatgta
caggtgtttgccgagggggttggttcctttgaagagtggcaaacactgcaaattttgggg
gtcagtgcaggacagggcacctactttggcgatccacagcagatctga
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