Shewanella amazonensis: Sama_0808
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Entry
Sama_0808 CDS
T00445
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_0808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_0808
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sama_0808
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sama_0808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_30
AAA_22
Gag_p24
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABL99015
UniProt:
A1S3Q9
LinkDB
All DBs
Position
complement(991771..993069)
Genome browser
AA seq
432 aa
AA seq
DB search
MKFESYSFAPEILQALAECGYETMTPIQRLAIPPVRRGQDVLASAQTGTGKTAAFALPIL
QKLLDTPKAREATKARALILAPTRELTEQIANNIKAYAKHLELAVTTVFGGGKTDVQAQK
LRKGTDIIVATPGRLLEHLLAGNLSLAAVEFLVLDEADRMLDMGFIADIQKLIQACNKER
QTLMFSATFSGGVRKLADEIMKKHTVLTADRHNTAATTVSQVVYPVEQRRKRELLSELIG
RKNWQRVLVFSATREDCEKLTEELNLDGIPSAVIHSEKAQGTRRRALKDFTEGKIRVLVS
TEVAARGLDIPDLEYVVNFDLPFLPEDYVHRVGRTGRAGKSGVAISFVSREEERTLADIE
KLIGQRLKRIVMPGYEVSNRDLLLKQLQKRRSFAKKTRVESDAIAQVAAEKSMAGRRVKV
KVGSTGNTKKIK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaatcctacagttttgcccccgaaatactgcaagcccttgccgaatgcggt
tatgaaaccatgacccccattcaacggctggccattccccctgtccgtcgcggccaggac
gtattggcttctgcccaaacgggaaccgggaaaactgcggctttcgcattgccaatcctg
caaaagctgctggacacgcccaaggccagagaagcgaccaaagcccgcgcgcttattctt
gctccaacccgcgagctgacagagcagattgccaacaatatcaaagcctatgccaaacat
cttgaactggccgttaccacggtattcggtggcggaaaaaccgatgttcaggcgcaaaag
ctgcgtaaaggcacagatatcatagtggccacgccggggcgcttactcgaacacttgctg
gcgggtaacctgtcgttggcagccgttgaatttttggtgttggatgaagccgaccgtatg
ctggacatgggctttatcgccgatatccaaaagctcatccaggcctgtaataaagagcgc
cagaccctgatgttctcggccaccttctccggtggagtgcgcaagcttgccgatgagatc
atgaaaaagcacacagtactgaccgccgacagacacaacactgccgctacaaccgtgagc
caggtagtgtacccggtggagcagcgccgcaaacgcgaactcttgtctgaactcattggc
cgtaaaaactggcaacgggtgctggtattctcggcgacccgtgaagactgtgaaaaactt
accgaagaactgaacctcgacggcatcccaagcgcggtgatccacagcgaaaaagcccag
ggcacccgcagaagagccctgaaagactttaccgaaggcaaaattcgggtgctggtatcc
actgaagtggctgcccgcggtctggatatcccggaccttgaatatgtggtgaacttcgac
ctgcccttcctgccagaagactatgtgcacagggttggccgcacaggccgtgctggaaag
agtggcgttgccatcagttttgtcagccgcgaagaagagcgcaccctggccgacattgaa
aaactcattggccagcgtctcaagcgcatcgtgatgccgggctatgaagtgtccaaccgt
gacctcttgctcaagcagttgcaaaagcgtcgcagctttgcgaaaaagacccgggtcgaa
agtgacgccattgctcaggttgccgccgaaaagagcatggccggacgccgcgttaaggtg
aaagtcggttcaaccggcaacaccaaaaaaatcaaataa
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