Shewanella amazonensis: Sama_0823
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Entry
Sama_0823 CDS
T00445
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
saz
Shewanella amazonensis
Pathway
saz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sama_0823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saz03021
]
Sama_0823
Transcription machinery [BR:
saz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sama_0823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ABL99030
UniProt:
A1S3S4
LinkDB
All DBs
Position
complement(1006839..1008701)
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AA seq
620 aa
AA seq
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MISMDHTPQSQLKMLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYE
EAPDADEMMMSEDNTDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQSSVAEYPQAISMILEQFDQFEADAIRLSDIISGFVDPNEEDVGPTA
THIGSELSEEELEDEDDMDEDEEEDEDGDSSDDDGAKGPDPEVARERFAALRAAYDNALK
VIEVKGRAHPESTRALFELGEIFKEFRLVPKQFDRLVKSMREMMDKVRVQERLIMKLCVE
QAKMPKKNFVKLFTGNETDLTWFNKEIEAGRPYSADLKLVDEDVQRCRAKLEAIEVETGL
SIESIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD
SATSESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSEILKSFLDD
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggatcatactccgcagtcgcaactaaagatgttgctcgccaaaggtaaa
gagcaaggttacttaacctatgcagaagtgaacgatcacttgcctgcagatatggtcgac
tctgaccagatcgaagatattatccagatgatcaatgacatgggtatccgcgtttatgaa
gaagcgcccgatgccgatgaaatgatgatgtccgaagacaacacggacgaagatgccgcc
gaagaagcagcggctgcgctggccacagtagaaagcgaacttggccgcaccactgacccg
gtacgcatgtacatgcgtgaaatgggtactgttgagctgctcacccgtgaaggcgaaatc
gttatcgccaagcgtatcgaagaaggcatcaacactgttcaaagctctgtggctgaatat
ccacaagctatctccatgatcctggagcaattcgaccagttcgaagcagacgccattcgt
ctgtctgatatcatttccggctttgtggaccccaacgaagaagacgttggccccaccgcg
acccatattggttccgagctttcagaagaagagctcgaggacgaagacgatatggacgaa
gacgaagaggaagacgaagacggcgacagcagcgatgacgacggcgccaagggcccggat
ccggaagtcgcccgtgaacgctttgccgcactgcgcgccgcctatgacaatgcactgaaa
gtcattgaagtcaaaggtcgtgctcatcccgagtctacccgcgccctgtttgaactcggt
gaaatcttcaaagaattccgtctggtgcccaagcagtttgaccgtctggtcaagagcatg
cgcgagatgatggacaaggttcgtgttcaggaacgtctgatcatgaaactgtgcgttgaa
caggccaagatgccgaagaaaaacttcgtcaagcttttcaccggtaatgaaaccgatctg
acctggttcaacaaagaaattgaagccggacgcccctactctgccgatctcaagttggtg
gacgaagacgttcagcgttgccgcgccaagcttgaagccattgaagtggaaaccggtttg
tccattgaatccatcaaggatattaaccgccgcatgagcatcggtgaagccaaggctcgc
cgtgccaaaaaagaaatggttgaggccaacttgcgtctggtaatttctatcgccaagaaa
tacaccaaccgcggcctgcaattcctggatctcatccaggaaggtaatatcggcctgatg
aaggcggtggacaagtttgaataccgtcgcggttacaagttctcgacctacgcgacctgg
tggatccgtcaggccatcacccgctctatcgcggatcaggcccgtaccatccgtattccg
gtgcatatgattgagaccattaacaaactcaaccgtatcagccgccagatgctgcaggaa
atgggtcgcgaaccctcacctgaagaactggctgagcgcatggccatgcccgaggacaag
atccgtaaggtactgaaaattgccaaagagcctatctccatggaaaccccaatcggtgac
gatgaagattcgcatctgggggatttcatcgaggacaccaccctcgagctgccactggac
agcgccaccagcgagagcctcaagcaggctacccacgaagtgcttgccggtttgactgcc
cgtgaggccaaggtactgcgcatgcgctttggtatcgacatgaacaccgaccacaccctc
gaggaagtgggcaagcagttcgatgttacccgtgagcgtatccgtcagattgaggccaag
gcactgcgcaaactgcgccacccaagccgctcggaaatcctcaagtcattcctggatgat
taa
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