Shewanella amazonensis: Sama_0963
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Entry
Sama_0963 CDS
T00445
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
saz03016
]
Sama_0963
Enzymes [BR:
saz01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Sama_0963
Transfer RNA biogenesis [BR:
saz03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Sama_0963
Prokaryotic type
Sama_0963
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABL99170
UniProt:
A1S464
LinkDB
All DBs
Position
1164226..1165173
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AA seq
315 aa
AA seq
DB search
MARRTKGRNIDGIVLLDKPTGMSSNHALQRVKRIYNASKAGHTGALDPLATGMLPVCLGE
ATKFSQHLLDADKRYLVTAKLGQRTDTSDSDGEVVSERPLNFTQEALDAALDSFRGDTLQ
VPSMFSALKYQGQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIR
TIIDDLGEKLGCGAHVIMLRRTAVAGYPYERMVTIEALEALLEQAEKEGVEPKTLLDPLL
LPMDTAVANFPEVNIPDAVAPYLMNGNPVRVAGVSSDSLLRITLGEARRFVGVGAINDDG
LLAPKRLVVFYDDEA
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgcaccaaagggcgcaatatcgacggtatcgtcctgctggataaacccacg
ggcatgagttccaatcatgccctgcagcgggttaagcgcatttacaatgcgtccaaagca
ggccatacaggcgcgctcgatcctctggcgaccggcatgttacccgtgtgcctgggtgag
gcaaccaagttttctcagcacctgctggatgcggataaacgttatctggttactgccaag
cttggtcagcgcactgacaccagcgattccgacggcgaagtggtcagtgagcggccatta
aacttcacccaggaagcgctggatgctgccttggacagtttccgtggtgataccctgcag
gtaccttcgatgttttcggcgcttaagtatcagggccagcccctgtataagtatgcccgt
gaaggtaaggaagttccgcgggaagccagacccatcacagtgttcgagcttaacttcatc
aagcttgaaggtgatgagctgacgctggatattcactgctccaagggtacatacatacgt
accatcattgacgatctcggtgagaagcttggctgtggcgcccatgtgattatgctccga
cgcaccgccgtcgccggttacccctacgagcgtatggtgaccatcgaagcgcttgaagca
ttgctggagcaggctgaaaaggagggcgttgaacccaagaccttgctcgacccgctgctg
ctgccgatggataccgctgtcgccaattttccggaggtcaatattccggatgcggttgcg
ccttatttgatgaacggtaacccggtgcgcgtcgcaggcgtgtccagcgatagcctgttg
cgtattacccttggtgaggcgcgacggttcgttggtgtgggcgccatcaatgacgatggc
ctgctggcgcccaagcgcctggttgtcttttacgacgatgaagcctaa
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integrated database retrieval system
