Shewanella amazonensis: Sama_1032
Help
Entry
Sama_1032 CDS
T00445
Name
(GenBank) 23S rRNA (uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_1032
Enzymes [BR:
saz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Sama_1032
Ribosome biogenesis [BR:
saz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Sama_1032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
Methyltransf_11
MTS
Methyltransf_15
Methyltransf_23
Methyltransf_12
TehB
Methyltransf_4
PrmA
RrnaAD
CMAS
Cons_hypoth95
TPMT
Ubie_methyltran
DOT1
DNA_methylase
UPF0020
Motif
Other DBs
NCBI-ProteinID:
ABL99239
UniProt:
A1S4D3
LinkDB
All DBs
Position
1248548..1249879
Genome browser
AA seq
443 aa
AA seq
DB search
MAQFFKAKPNQAKKLSQKIALKVQRLDHLGAGIAEHQGKVVFIPGALPGETVEVQLTEQK
KNYARAKLQRVSEASPDRQTPPCPWYGKCGGCDLQHLSLPRQLEYKRQALGDIVSRSAAQ
TVTVNTDEVSGDSWHYRRRARLATLLDKETNQLALGFREEGSKSVVGIDSCAVLARPLSE
LISPFATLLNRLKGKQRLGHLELTQAANGLFAVLRVTAPLAQSDKKLLSAFADERQIALL
LQGNEGELEFLSSGHELPYYQLDGLKLAFAPGNFIQVNGEVNQAMVAQAMNWLDVHAGER
VLDLFCGVGNFSLPLAKQGAEVVGVEGVPEMVAQAKQNAAINGLDNLSFYCADLSEDLAA
EPWLGKIDKLLLDPARAGAYESLKWLKKMKPAKVLYVSCNPASLARDSVLLFEAGYQLTR
LGLVDMFPQTHHSEGMALFELVN
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtttttcaaagcgaaacccaatcaagcgaaaaagctctcccaaaagatagca
ctcaaggtgcaaagactcgatcacttgggggccggcattgccgaacatcagggcaaggtg
gtgtttattccgggcgctttgccgggcgaaaccgtggaagtgcagctcacagagcaaaag
aaaaactatgcccgtgccaaattgcagcgggtatcagaggcaagccccgaccggcaaaca
ccgccttgcccctggtatggcaaatgcggtggctgcgatttacagcatctgtcgttgcca
cgtcagcttgaatacaagcgtcaggcgctgggtgatattgtcagccgttcggctgcgcaa
acagtgacagtcaataccgacgaagtaagcggtgacagctggcattatcgtcgccgggcc
aggttagcaactctcctcgataaagagaccaaccagcttgcactgggattccgggaagag
ggcagcaaatcggtagtgggtatcgacagctgtgctgtgctggccaggccgttgtctgag
cttatttcgccttttgccacgctccttaaccgtctcaagggcaagcagcggttggggcat
ctagagctgacacaggccgccaatgggctttttgccgtgttgcgtgtgactgccccgctg
gctcaaagcgataaaaagctgctttcggcctttgccgatgagcggcaaattgccctcttg
ctgcaggggaatgaaggggagcttgagtttctctccagcggccatgagttgccctattac
caattggacggtctcaagctggcttttgcgccgggtaactttattcaggtcaatggcgag
gtcaaccaggccatggtggcacaggccatgaactggctcgatgtgcatgccggtgagcgg
gtgctcgacctcttttgcggcgtgggcaacttcagcttgcctcttgcaaagcaaggagca
gaggtagttggcgttgaaggtgtgcccgaaatggtggcgcaggcgaagcaaaacgctgcc
ataaacggcttggataatctcagtttttactgcgcagacctcagtgaagatttggccgcc
gagccctggcttggcaaaatcgataagctgctgctggacccggcccgtgccggtgcatat
gagagtcttaagtggctcaaaaagatgaagcctgccaaggtgctctatgtgtcctgtaat
ccggcaagccttgcccgtgattcagtgctgctttttgaggcaggatatcagctgacccgc
cttggtctggtggacatgttcccccagacccatcacagcgaaggcatggcattgttcgaa
ttggtcaattaa
DBGET
integrated database retrieval system
