Shewanella amazonensis: Sama_1154
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Entry
Sama_1154 CDS
T00445
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
saz
Shewanella amazonensis
Pathway
saz03030
DNA replication
saz03430
Mismatch repair
saz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sama_1154
03430 Mismatch repair
Sama_1154
03440 Homologous recombination
Sama_1154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saz03032
]
Sama_1154
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_1154
Enzymes [BR:
saz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sama_1154
DNA replication proteins [BR:
saz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sama_1154
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sama_1154
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABL99361
UniProt:
A1S4Q5
LinkDB
All DBs
Position
1404117..1407590
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDK
GIKPIIGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEW
LLTYNSGILLLSGAKEGDLGKALIKGNAAQAASLTQFYQKHFPDRYFIELIRTGRADEET
YLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYL
RSEDEMCELFSDIPEAIENTVEIAKRCNVTVRLGEYFLPNFPTGELSTADFLVERSKEGL
EERLEFLFPDPAERAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPG
LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFSVL
KRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEE
ISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEAGSVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
EFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKG
VGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPHRASMMAT
LPEAMQAADQHAKAQATGQHDMFGLLNDDQQDEKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTARNIIDISEARSHFAK
ALEVDLASQQATEAMLDKFFDVITPWKGGAVPLIVNFSRADASGRLQLGDDWRVDPSDDL
VLALQTLIGPDKIRIQF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaccccgttttgttcatctgcgcgttcactcagatttttccatgaccgatggt
ctggcaaaggttaagcccattcttggcaaggccgaggccgagggcatggcggcaatcgcg
ctgacggatcagaacaatctctgtggtctggtgaagttttacagtacctgccatgacaaa
gggataaagcccattattggtgccgacttctggatgctggtgcccgggtttgaagacgag
ttttgtgccgtcacagtgctggcgatggataacgagggttatcaaaacctgactcagctt
atcagtcaggcgtatctgcgtggccaggttcagggtagggtggcaatcgatcaggaatgg
ctgctgacatacaacagtggcattttgctgctctccggcgccaaagaaggggacctgggt
aaggcgctgatcaagggcaacgccgcgcaggcggccagcttaacgcagttttatcagaag
cattttccagaccgttattttatcgaacttatccgcaccggccgtgccgacgaagaaacc
tatctgcacatggcagtaaagcatgctgccgaggtcgggctgcccgtggtggccaccaat
caggtggtgtttttgagtccggaagactttgaagcccacgaaatccgggtcgctattcac
gatggttttaccctggctgacaatcgccgccccaaaaaatacagtgaacagcagtatctt
cgcagtgaagatgaaatgtgcgagctgttttccgatattcccgaggccattgagaacacg
gtagagatcgccaagcgctgtaacgtgaccgtgcgcctcggtgaatacttcctgcctaac
ttccccacgggcgagctgtccaccgccgattttctggttgaacgatccaaagagggcctt
gaagagaggctggagtttttgttccccgatcccgccgaacgggccgagaaacgtaaggaa
tacgatgagcgtctggacatcgagcttcaggtaattaaccagatgggctttccgggctac
ttccttatcgtaatggagtttatccagtggggtaaggataacggcattccggtagggccg
ggccggggctccggtgccggttccctggtcgcctatgccctcaaaattaccgaccttgac
ccgctggaatttgacctgctgttcgaacgctttttgaaccctgagcgggtttccatgccc
gacttcgacgttgacttctgcatggacagacgcgacgaggtgattgaccacgtggccgag
ctttacggccgcgaggcggtctcgcagatcattaccttcggtaccatggcggccaaagcg
gtagtgcgcgacgttggtcgggtgctgggtcactcctatggttttgttgaccgtatctcc
aagatgatcccgcctgagccgggcatgaccctggccaaagccttcgaggtggaacccggt
cttcaggaggcctacgacgccgatgaggaagtaaaagaccttattgatatggcgcgtaag
cttgagggcgtgacccgaaacgcaggtaaacacgcaggtggcgtggtaattgcgcccacc
aaaatcaccgacttctcaccgctgtattgcgacgccgagggcaaaaacccggttacccag
ttcgacaagaacgatgtggaatacgccggactggtaaagttcgactttttgggcctgcga
accctcactattatcgactgggcactggggatgattaacccaaggctggccaagctgggt
aagccgccggtggatattgccgccattccgctggatgacagcaagtcatttagcgtgctc
aaacgctatgagaccacggcggtattccagctcgaatcccgcggcatgaaggaccttatc
aagcgtctgcaacccgactgcttcgaagatatgattgcactggtggccctgttccgtccg
ggcccattgcaatcgggcatggtagataactttattgatcgtaagcacggtcacgaagag
atttcgtacccggatgccacctggcagcacgagagcctcaaaccgattctggagcccacc
tacggcatcatcctctaccaggagcaggtgatgcagattgcccagacgctggcgggctat
accctgggtggcgccgacatgctgcgccgggccatgggtaagaaaaagcctgaagagatg
gccaagcaacgggcaggctttgaggccggctcggtgaaaaatggcgtggatggcgagctg
gccatgaagatcttcgatctggtggaaaagttcgccggttacggcttcaacaaatcgcac
tcggccgcctacgctctggtgtcctatcagacgttgtggctcaaaacccacttcccgtcc
gagtttatggcggcggtgatgtcggcagatatggacaacactgacaagattgtgaccctg
gtggatgaatgcgatcgcatggggcttaaaatcattccgccggatgtgaacaagggcctg
ttcaagttcaccgtggatgaagacctcaacatcgtttacggtatcggcgccatcaagggc
gtgggtgaggggccggtggaggccattcttgaggcccgtaaagatggccccttcaccgac
ttgttcgacttttgcgcccgtatcgacttgaaaaagctcaacaagcgggtgattgaaaag
ctgatttactccggggcgctggatagcctcgggccgcaccgggcctccatgatggcgacc
ctaccggaggccatgcaggcggcagatcaacacgccaaggcccaagccacaggccagcac
gatatgtttggtctcctgaatgatgatcaacaagacgagaagcagcaatttgttgagtgc
actccatggccggacaaaatttggctcgaaggcgagcgtgaaaccctggggctgtatctc
accggtcatcccatcaatcagtatctgaaagagctgaaaaactacacctccggcaggcta
aaggatattcaccccaccgagcggggcaaaaccgtcaaggccgctggtctggttgtggca
agccgggtgatgcttaccaaacggggctccaaaatggggctgctgacgctggatgacaag
agtgcccgcctggaggtgatgctctttactgaagcctttgaaaagtttggtcatttgctc
gagaaagaccgcattcttatctgcgaaggggaagtgagcttcgatgacttctccggcggc
aaccgcatgaccgcccgtaatattattgatatcagcgaggctcgcagccattttgccaag
gcgcttgaggtcgatttggcgtcacagcaggccacagaggcaatgctggacaagtttttt
gacgtgattacgccctggaagggcggcgctgttcccctgattgtgaacttcagccgcgct
gatgccagcggccgcttgcaattgggtgacgactggcgggttgacccgtctgacgacctg
gtactggcactgcaaaccctgataggccccgataaaattcggatccagttctag
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