Shewanella amazonensis: Sama_1612
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Entry
Sama_1612 CDS
T00445
Name
(GenBank) peptidoglycan-binding domain 1
KO
K21470
L,D-transpeptidase YcbB
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
saz01002
]
Sama_1612
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
saz01011
]
Sama_1612
Peptidases and inhibitors [BR:
saz01002
]
Cysteine peptidases
Family C82
Sama_1612
Peptidoglycan biosynthesis and degradation proteins [BR:
saz01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Sama_1612
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABL99819
UniProt:
A1S613
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All DBs
Position
1970262..1971680
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AA seq
472 aa
AA seq
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MARVYWIFLLSLVTSAALGTQGSYSRQLMRDQASLLILAEPSLEIELSPLLRNFDTDSKS
LERDYLKLKNAWHQLGVHSSPGDMDQSGKMGANRSETVESAHHQNATQDLNSRLIALEPN
DRFLNTMNRLRHLLWLAEQPWQPIVLNGLLRPGDSHTEVVAIAKRLWLLGDMETEPGYAL
SRYDDEVAQGVKAFQHRHGLKQDAVIGPKTLYWLNLAPDTRAARLARDYLLQSRERQTLP
STYVLVNIPAFDLELVDDGEALMHSRVIVGKPSRKTPFIQSEISAVVVNPSWRVPRRLMR
LDVLPKVRKDGSYLSRKGFIVWSREGEEVKETDDFFQSAAAGKFPYLLEQRPGPDNALGR
FKLHFANEDNVYLHDTPDKHLFDEPMRALSSGCVRVEKINELSAWLANGRLADPRRWQQT
LQTPQTTRWFTLKERLPVHFVYWTSWVDAEGKAQFREDIYGIAQNNQILAAK
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggcaagagtctattggatctttttactgtccctggtcacctcggccgcactgggcacg
cagggcagttacagtcgtcaattgatgcgtgaccaggccagcttgcttattttggctgag
ccctcactcgagattgaactaagccctttgctacggaatttcgacacggacagcaagtct
cttgagcgggactatcttaagctgaaaaatgcctggcaccagctgggtgtgcattcaagc
ccgggggatatggaccagagcggcaagatgggtgccaaccggagtgaaaccgtcgaatcg
gctcatcatcaaaatgcaacacaggatctcaactcaagactaatagccctcgagcccaac
gaccgattcctcaataccatgaaccgcttgcggcacttgctgtggttagccgaacaaccc
tggcaacccatagtgctgaacggtttgctcaggccaggtgattcgcatactgaggtggtg
gcaattgcaaagcggctatggttgcttggggatatggagactgaacctggttatgctctt
tcccgctatgatgatgaagtggcacagggggtgaaggcatttcagcatcgacacgggcta
aaacaagatgcggtgattggtcctaaaaccctctattggttgaaccttgcacccgatacg
agagcggcacggttagccagagactatctattgcagagccgcgagcggcaaacgctaccg
tcaacctatgtgctggtcaatattcccgcctttgatttggagctggtcgatgacggtgag
gcactcatgcactcacgggtaatcgttggtaaacccagccgtaaaacgccctttattcaa
agtgaaataagcgctgtggtggtgaatccctcctggcgcgtgccccggcgcttgatgcgc
cttgatgtgctgccaaaggtacgtaaagatggcagctatctctctcgaaagggctttatt
gtctggagcagggaaggtgaggaagtgaaggaaacggacgactttttccaaagtgcggca
gcgggaaagttcccttacttgctggagcaacgtccaggtccggacaatgcgttgggacgg
tttaaactgcactttgccaacgaagataatgtctatttgcacgacaccccggataaacat
ttgtttgatgaaccgatgcgggcattgtcgtcgggttgtgtcagggttgagaaaataaac
gaattgtcggcatggcttgccaatggccgccttgctgatccgcgtcgctggcaacaaacc
ttgcaaacgccacaaaccacccgctggtttaccctcaaagaacggctacctgtccatttt
gtctactggaccagttgggtcgacgccgaaggtaaggcgcaattcagggaagacatctac
ggaattgcgcaaaataatcaaattcttgccgccaaatag
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