Shewanella amazonensis: Sama_1813
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Entry
Sama_1813 CDS
T00445
Name
(GenBank) transcriptional regulator, RpiR family
KO
K19337
RpiR family transcriptional regulator, carbohydrate utilization regulator
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
saz03000
]
Sama_1813
Transcription factors [BR:
saz03000
]
Prokaryotic type
Helix-turn-helix
Other families
Sama_1813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_6
SIS
SIS_2
HTH_Tnp_ISL3
HTH_29
HTH_24
MarR
Penicillinase_R
HTH_Crp_2
DUF3640
Motif
Other DBs
NCBI-ProteinID:
ABM00019
UniProt:
A1S6L2
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Position
2207350..2208204
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AA seq
284 aa
AA seq
DB search
MNTLEKVQKSLNQFSKSERKVAEVILASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDT
KGFPDFKLHLAQSLANGTPYVSRHVEEDDSPESYTTKIFESSMASLDTARQSLDMQAINK
AVDILTQAKTISFFGLGASAAVAHDAQNKFFRFNVPVICFDDVLMQRMSCINSNEGDVVV
LISHTGRTKSLIDIARLARENGAAVIGITARNSPLSVECTLSVTMEVPEDTDMYLPMASR
LAQLVVIDVLATGFTLRRGPRFRDSLKRVKEALKESRINKDPIL
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgaataccctagaaaaggtccagaaaagtctaaaccaattcagcaagtcagaacgcaaa
gttgccgaagtgattctggcctctccccaaactgcgattcactccagtatcgctaccctg
gccaaaatggccgatgtgagtgagcctacggttaaccgtttctgccgtcgccttgatacc
aagggctttcctgattttaagttacatctggcccaaagtcttgccaacggcacaccctat
gtcagcagacacgtggaagaagatgactcgccagagtcttacaccactaaaatcttcgaa
tcttcaatggcttcccttgatactgcacgtcaaagcctcgacatgcaggcgatcaataaa
gcagtagatattctgacacaggccaaaactatttcgttcttcggccttggcgcttcggct
gctgtggcccacgatgcgcaaaacaaatttttccgcttcaatgtacctgtcatttgtttc
gatgatgtgttgatgcagcgcatgagttgcattaacagtaacgaaggtgacgtagtggtg
cttatctctcacactggccgcaccaagtcactgattgatatagcaagacttgctcgcgaa
aatggcgcagccgtgataggcattaccgccagaaactcacccttatcagttgaatgtacc
ttgtcggtcaccatggaggtgccggaagatactgatatgtacctgccaatggcgtcccgc
cttgcacaattggtcgtaattgatgtactcgcaactggatttaccttaagacgcggtcca
agattcagggacagcctgaagcgcgtaaaagaagcattgaaagaatcccggatcaataaa
gacccgatcctgtaa
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