Shewanella amazonensis: Sama_1860
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Entry
Sama_1860 CDS
T00445
Name
(GenBank) thiamine biosynthesis protein ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
saz
Shewanella amazonensis
Pathway
saz00730
Thiamine metabolism
saz01100
Metabolic pathways
saz01240
Biosynthesis of cofactors
Module
saz_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
Sama_1860
Enzymes [BR:
saz01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
Sama_1860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
ABM00066
UniProt:
A1S6Q9
LinkDB
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Position
complement(2263751..2265745)
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AA seq
664 aa
AA seq
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MSNRRETRKAAQDFIDNLKPLRRPNSEKIFIEGSRPDIQVGMRQIHQTDTRIVNTRGEET
FEANPPIKVYDCAGPYSDPNADINVRRGLPKLREGWILARSDTEELNSASSNFTQQRLAD
DGLDHLRFDVLPKPRRAKAGKRVTQLHYARQGIITPEMEYIAIRENMARDEVTDEQLNRK
KPGEAFGALVSKPITPEFVRDEVARGRAIIPANINHPEAEPMIIGRNFLVKVNANIGNSA
VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIVRNSPVPIGTVPIYQALEKVN
GIAEDLNWEVFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRVTGIVSRGGSIMAKWCL
SHHQENFLYTHFRDICELCAAYDVSLSLGDGMRPGSIADANDEAQFAELETLGELVKIAW
EYDVQTIIEGPGHIPMQLIKENMDKQLEHCAEAPFYTLGPQTTDIAPGYDHFTSGIGAAM
IAWYGCAMLCYVTPKEHLGLPNKEDVKQGLIAYKIAAHAADVAKGHPGAQIRDNALSKAR
FEFRWEDQYNLGLDPDTARAYHDETLPQESAKVAHFCSMCGPKFCSMKITQDVRDYAASL
ENAARSEADSVQTLEVGAAESYSKAESYARAGMDKMSATFKQTGSALYSETHVEAALSTE
KEPV
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccgccgcgaaacccgtaaagccgcccaggactttatcgataacttaaagccg
ctgcgccgccccaattccgaaaagattttcattgaaggctcacggcctgatatccaggtg
ggcatgcgccaaatccatcaaaccgatacccgtatcgtgaatacccgcggcgaagaaacc
tttgaggccaacccacccatcaaggtgtacgactgcgccggtccttattcagaccccaat
gccgacatcaatgtgcgccgaggcctgcccaagctgcgtgaaggctggattttagcgcgt
agcgataccgaagagcttaacagcgcctcatccaactttacccagcagcgtctcgccgat
gacgggctggatcacctgcgttttgatgtgctgccaaagccgcgccgcgccaaggccggt
aagcgggttacccagctgcattatgcccgtcagggtattatcacccctgagatggaatac
atcgccattcgcgaaaacatggcccgggatgaagtcaccgatgagcagcttaaccgcaaa
aaaccaggcgaagcctttggcgctctggtgagcaaacccattacccctgagtttgtccgt
gacgaagtagcccgtggccgggcgattattccggccaacatcaatcaccccgaagcggag
cctatgatcattggtcgcaactttttggtgaaggtgaacgccaatatcggcaactcggcc
gtgacctcatccatcgaagaagaggtggaaaagctggtgtggtccacccgctggggcgca
gataccgtgatggacctgtccaccggccgttatattcacgaaacccgcgaatggattgtg
cgtaactcaccggtgcctattggcactgtgccgatttatcaggcgctggagaaggtcaac
ggcatcgccgaagatcttaactgggaagtattccgcgacaccctgattgaacaggccgag
cagggggtggattacttcaccatccacgcgggcgtgctgcttcgctacgtgcccatgact
gcaaaacgggttaccggcatagtgtcccgcggcggctccatcatggccaaatggtgctta
agccaccatcaggaaaacttcctctacacccattttcgcgatatttgcgagctttgcgcc
gcctatgatgtgtcgttgtcgctcggcgacggtatgcgtccgggctccattgccgatgcc
aatgacgaagcccagtttgctgagctcgaaaccctgggggagctggtaaaaatcgcctgg
gaatacgatgtgcagaccatcattgaaggtccgggccacatccccatgcagctcatcaaa
gagaacatggataagcagcttgagcactgcgcagaggcgccgttttataccctgggcccg
caaaccaccgacattgccccaggctacgatcacttcacctccggtattggggcggccatg
attgcctggtatggctgcgccatgctttgttacgtcacgccgaaagaacatttgggcctg
ccgaacaaggaagatgtaaaacaagggcttattgcttacaagattgccgcccacgctgcc
gatgtcgccaagggacatcccggcgcgcaaatccgcgacaatgcgctgtccaaggcacga
ttcgagtttcgctgggaggatcagtacaacctcgggctggatcccgatactgcccgtgcc
tatcacgacgaaactctgccgcaggagtcggccaaggtggcccatttttgctccatgtgc
ggccccaagttctgctcgatgaaaatcacccaggatgtacgcgactatgcggccagtctg
gagaatgctgcccgcagcgaggctgacagcgtacagacccttgaagtgggggcggccgaa
agctattccaaggcagaaagctacgccagggcgggtatggacaagatgtcggccaccttt
aaacagacaggcagtgcgctttacagcgagactcatgtggaagcggccctgagcaccgaa
aaggaaccggtgtag
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