Shewanella amazonensis: Sama_1901
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Entry
Sama_1901 CDS
T00445
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
saz
Shewanella amazonensis
Pathway
saz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Sama_1901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_1901
Enzymes [BR:
saz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Sama_1901
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Sama_1901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
AAA_22
UvrD_C_2
AAA_11
ResIII
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABM00107
UniProt:
A1S6V0
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All DBs
Position
2322070..2325744
Genome browser
AA seq
1224 aa
AA seq
DB search
MQASMPLDAFTLPFDGARLIEASAGTGKTYTIANLYLRLLLGIGQQRPFKVEEILVVTFT
NAATSELRDRIRRRIQDGFRLCLGEPSEDRFLTQLLHALPDRQLALRQLDLALKTLDEAA
IYTIHGFCQRVLSDMAFESALLFESEFTLDDSELLSMAAADFWRAHCYPLSADIAAMVQA
KFASPKALEQELKSLLGARDAVVELQMEDFSKLASGFSARIARLRLAWQRQAEDTLTTLC
KLPLNGVSYGKAADGFPKLKNHWDTMTAWSLRCEGTPPEKAMQAVAYGNIKLNKGGQLPG
PETLSLLVQIDELLHAQENLMPAFLVLAKNEIQARFDGLKAERNLMAPDDLLKHLAKALG
VQGSGSGSGFEPASEIDREIALRLSSEVASRFPMALIDEFQDTDPLQFAIFSALYRQQPR
AQGLLMIGDPKQAIYAFRGGDIHTYLGARRTAAAHYSLGTNYRSSSAMVQAVNTVFSVRE
RVFLSDEIPFEPVAASDSGAKTLLIDGKTQGPALQIALLGEDPDKGLNKQTARALMAEDA
AAHIGQLLCLATEGRAVLADKQRPLLAKDIAVLVRDRNEAAFIKDALTRRNIGAVFLSRD
NVFATKEASELLHVLAALAQPRDEKRLRAAMATRLMGWSLSEIAAFNQDEEARRQALECF
ERWHQRWQKQGVMPALMAFADDTKLLERLGGDKEADRRLTDFRHLCELLEQAGASLDGIS
ALLGWFEQALLDPGSDEAMQLRLESEQNLVQIVTIHKSKGLEYGLCYIPFLSLARDSRGK
PSPLLYHKDDRLVWDLLQTDEGVECYDAERLGEDLRLLYVALTRPVYGCRLGLANHSRML
KAGISSEVYKTALGFLLGIDSKDCDINVLRQAAERVSSHAHGSEIIGVVDIIQHDLTVLE
SAQHESTEPPSPRKPNRIGEESWRVGSYSALIAQGAGHTEHPGDIARTHEETTAAAIPGA
GDESFSVLELPLPDEPEPASQDTGALSRFSFPRGANAGSFMHQVLELIRFDAVAETLPEV
LPDAMAHFGIDTQWQPVLDTWYQDLMGAPLQDEKGQFALGDLSPAQLLVEMEFYLPVSRL
KPGALGDLLALYGYRSDFGFDTLNGMLKGFIDLCFSHDGRFYIADYKSNHLGDTLDHYHR
DAMHTAIQDHHYDLQYLLYTLALHRLLRSRLAQYDYDKDVGGCFYLFLRGMSASSPGTGV
YFDKPPKLLIQALDALFEGKEIRL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcctcaatgcctttggatgcctttaccttgcctttcgacggtgctcgcctgatt
gaagccagcgccggcacgggcaaaacttacaccattgccaatctgtatttgcgcctcttg
ctgggcattggtcagcagcgtcctttcaaggtggaagaaatcctggtggtaaccttcacc
aatgccgccaccagtgagcttagagacaggatcagacgccgaattcaggatggctttcgc
ctctgcctcggagagcccagcgaagacaggtttctcacccagctgcttcacgcactcccc
gacagacaattggccttaaggcagctggacctcgcgctcaagaccctggatgaagcggcc
atctacaccatccacggcttttgccagcgggtcttgtcggatatggcctttgagtctgcg
ctcctgtttgaaagcgaatttaccctggatgacagcgaactcttgtccatggcagcggca
gatttctggcgtgcacactgttatcccctgagtgcagacatcgcggccatggtacaggca
aaatttgcctcgcccaaagcgctggagcaggagcttaagtcactccttggggcaagagac
gccgtggtcgagctccagatggaggacttcagtaagctggcgagtggctttagcgcccgt
atcgcaaggcttcgcctggcctggcaacgtcaggcagaagacaccctcaccacactctgt
aagttgcccctcaatggcgtcagctacggtaaggccgcagatgggttcccaaagcttaaa
aatcattgggataccatgacagcatggtcgcttcgctgtgaaggtacgccacctgaaaaa
gccatgcaggccgtcgcctacggcaatatcaagctcaacaaaggcgggcaattgccgggc
cctgagacactttcgctgctggtacaaattgatgagctgctgcacgcgcaggaaaacctg
atgccggcattcctggtgcttgccaaaaacgaaatacaggcccgattcgatggcctcaag
gccgaacgcaatctgatggcaccggatgaccttctcaagcacctggccaaagcacttggc
gttcagggttccggttctggttccggtttcgagcccgcgtcggaaatcgatagggagata
gccctcagactgtcttcagaagtcgccagccgtttccccatggccttgattgacgagttt
caggacacagacccactgcaatttgccattttcagtgccctctaccgccagcagccaagg
gctcagggtctgctgatgattggcgaccccaaacaagccatttatgccttccggggcggt
gatattcacacctatcttggggccagacgcaccgctgctgcccactatagtctgggtacc
aattaccgctcatccagcgccatggtgcaggcggtcaataccgttttcagcgtcagggaa
agagtgtttttaagtgatgaaatccccttcgagcctgtggcagcctccgattcaggtgcc
aaaacactgctgattgatggcaagacccagggacctgcgctgcaaatcgccttgctgggt
gaagaccccgacaagggattgaataaacaaacggccagagccctgatggcagaagatgcc
gctgcccatataggccagttgctctgtcttgccacagagggccgtgcggtgcttgccgac
aaacaaaggccgctcctggcaaaagacattgccgtgctggtcagagacagaaacgaagcg
gcatttatcaaagacgccctcacccggcgcaatattggcgccgtatttttgtcccgcgac
aatgtgtttgccaccaaagaagcctcggagctgctgcatgtgctggccgcactcgctcag
ccaagggatgaaaaacgccttcgcgcagctatggccacccggctgatgggctggagcctc
agtgagatagcggcgttcaatcaggacgaagaagcccgtcgccaggctctggagtgtttt
gagcgctggcaccagcgctggcagaagcagggcgtcatgcccgccttaatggcctttgcc
gacgataccaaactgcttgagcgtcttggtggagataaagaagccgaccggcgcctgacc
gactttcgccacctgtgcgaattgctcgagcaggccggtgcatcgctcgatggcataagt
gcgctgctcggctggtttgagcaggcgctgctggaccccggcagtgatgaagccatgcag
ttgaggctggagagcgaacaaaacctggtacagatagtgaccatccacaagagcaagggg
ctggaatatggcctctgttatatcccctttttaagtctggccagagacagccgcggcaaa
ccgtcgccacttctgtaccacaaggatgaccgtctggtgtgggacctgctgcaaaccgat
gaaggcgtcgaatgctatgatgccgaacgtctgggtgaagatctgcgtttgctgtatgtg
gcgctcacccgccccgtctacggctgccgtctgggccttgccaatcacagccgcatgctc
aaagccgggataagcagtgaagtgtacaagactgcattgggcttcttgcttggcatcgac
agcaaggattgcgacatcaacgtgctgcgccaggccgcagagcgcgtcagcagccatgca
catggcagcgagatcatcggggtggtggacattatccaacatgatctgacggtactggaa
agtgcacagcacgaaagcacagagccaccaagcccacgaaagccaaaccgcattggtgaa
gaaagctggcgtgttggcagctattcggcgctgattgctcagggggctggtcatacagaa
caccctggtgatatcgccaggacccacgaagaaaccactgccgccgccattcccggagcc
ggtgatgagtctttttcagtgctggagctgccgctccccgatgagcccgagcccgcttct
caagataccggggcgctgagccgtttctctttcccccgaggcgcaaacgccggcagcttt
atgcaccaggtgcttgagcttatccgctttgatgcagtggccgagaccttgcccgaggtg
ctgcccgatgccatggcccattttggcatcgacacccaatggcaacctgtgttggatacc
tggtatcaggacctcatgggggcgccactgcaggatgagaaaggccagtttgcgctgggc
gacctgtcgccagcccagctgctggtggaaatggagttctacttacccgtcagtcggctt
aagcccggggctttgggagatttgctggcactctacggttatcgcagtgactttgggttc
gacacccttaacggcatgctcaagggctttattgacctttgcttcagccatgacggccgc
ttttacatcgccgattacaagtccaaccatctgggtgacaccctcgaccactatcacagg
gacgccatgcacactgctatccaggatcatcattacgatttgcaatacctgctctatacc
ctggcgctgcaccgactgctgagaagccgcctcgcgcaatacgactatgacaaagacgtt
ggcggttgtttttacctgttccttagaggcatgtcggcctcatctcccggcaccggtgtg
tattttgacaagccgcccaagctattgatccaggcgctggacgccttgtttgagggtaag
gagatacggctatga
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