Shewanella amazonensis: Sama_1989
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Entry
Sama_1989 CDS
T00445
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_1989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_1989
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_1989
Enzymes [BR:
saz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Sama_1989
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sama_1989
Ribosome biogenesis [BR:
saz03009
]
Prokaryotic type
rRNA processing factors
Sama_1989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABM00195
UniProt:
A1S738
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All DBs
Position
2416434..2419859
Genome browser
AA seq
1141 aa
AA seq
DB search
MRHSNLRSGPECTDFSPVTHLKKNDVTMKRMLINATQSEELRVALVDGQQLYDLDIESPG
HEQKKANIYKGKITRVEPSLEAAFVDYGAERHGFLPLKEIAREYFPKGYSFQGRPNIKEV
VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE
AMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLLRHWDAIKEASESGPGPMLIHQESNV
IVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVRPDFVERVKQYKAEVPLFTHYQIESQ
IESAFQREVRLPSGGSIVIDPTEAMTSIDINSARATKGGDIEETALNTNLEAADEIARQL
RLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQDRARVQLGRISRFGLMEMSRQRLRP
SLEESAAHICPRCHGQGTIRGTESLALSILRLMEEEAIKDNTSQVEAIVPVDVAAFLLNE
KRKAIRIIEQRHEVEVYVIPDPHMMTPEYKVIRHRQDDEIEEASYKRVEKPEAKLYEPRK
LERAQAPEPVLKGFSAPLESPPAAAPKVEAKPVKAASEVKPGFFSRLFAAIGSLFGGDNT
ETEEKKAPARNGRQQNTRGRNRRNDNRRDDGRQEGRSADSRRDDSRREDGDKRRSSDSRR
GRNKPEQADDKQLRDKSDKPRDERPKRERAPKREKPETVEAADDAVEPKQEAVRERRQRR
NMRRKVRLDDGAAQENLDAVNAQESTEDTAAESTQVVAKDKSDEKQTRSRRQPRKPKVEE
KAAETEQDVTDAANSSDAAVATTDVVAAPVVEAVSEVGTAATDMLDSDAQAADDAQDDTD
GEDKPRRDGRDGQRRSRRSPRHLRAAGQRRRRDEQEQQTGAEGGELAQAELDLPQADVDA
AGAPAAAPQDVVAKDTAASEVVTQESVLEKAEETADVVIVNDTPKAEAPVAGAVVADTAA
EVVVEVAPAAAVVDTPVAAVEAPVAETAAPVVEDAVVEAPVVETAAQAPAVAVESNAVET
KAEEAKAAEPKAAEPKAAEKVTSTAPMAKPAAVMPARVKPVEKPVADVAADIAPTKATAA
PARPAGSRFGSMVSSEMTKPSIEAREQVATPKGREYEAASTDASSAKVQSSNSAGSDMAR
P
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
gtgaggcacagtaatctgagatcaggcccggaatgcaccgacttttctccggtgacccat
ttaaagaagaatgacgtcaccatgaaacgtatgctaatcaacgcaactcaatctgaagag
ttgcgcgttgcccttgttgatgggcaacaactctatgatctggatatcgaaagtccagga
cacgaacagaaaaaagccaacatttacaaaggtaaaattacccgcgtagaaccctctctc
gaagccgccttcgttgattacggcgccgagcgtcacggcttcctgccactcaaggaaatt
gcccgcgaatacttcccgaaaggttactccttccagggccgccccaatattaaagaggtg
gtgagcgaaggtcaggaagttattgttcagattgataaagaagaacgtggcaacaagggc
gctgccctgaccacctttatcagcctggctggctcctatttggttctgatgcccaacaac
ccccgcgccggtggtatttcgcgccgtatcgaaggtgatgagcgcactgaactcaaagag
gccatggccgatttggaagtccctaacggcatgggccttatcgtgcgtaccgccggggtg
ggtaaagatgccgccgaactgcagtgggaccttaaagtgctgctgcgtcactgggatgcc
attaaggaagcttctgagagtggcccaggccccatgctcatccatcaggaaagcaacgtt
atcgtgcgcgccattcgcgattacctgcgccgcgatgtgggcgaaatcctgattgaccat
ccaaagattttcgaacaggccaaacagcacatcgccacagttcgtcctgacttcgttgag
cgagtgaagcagtacaaggccgaagtgccactgttcacccactatcagattgagtctcaa
atcgaatctgcgttccagcgtgaagtgcgtctgccctctggcggttctatcgttatcgac
cccaccgaagccatgacttcaatcgatatcaactctgcccgtgccaccaagggcggcgat
atcgaagaaaccgcgctgaacaccaacctggaagccgccgacgagatcgcccgtcagctg
cgtctgcgtgaccttggcggcttgattgttatcgactttatcgacatgacgcctgtgcgc
catcagcgtgaagtggaaaaccgtctgcgtgacgccgtccatcaggaccgtgcccgtgtg
caactgggccgtatcagtcgctttggcctgatggaaatgtcccgtcagcgcctgcgtcct
tcactggaagaatcagccgcacatatttgcccacgctgtcatggccagggcactatccgc
ggtaccgaatcgctggccttgtctatcctgcgtctgatggaagaagaagccatcaaggac
aacacatctcaggttgaagccatagtgcctgtggatgttgccgcgtttctgctgaacgaa
aaacgtaaagccattcgtatcatcgagcagcgccacgaggttgaagtgtacgtgatcccg
gatccgcacatgatgaccccagagtacaaggtgattcgtcatcgtcaggacgatgaaatc
gaagaagccagctacaaacgcgttgaaaagcctgaagcaaagctgtatgagcctcgcaaa
ctggagcgcgctcaggcccccgagcccgttctgaaaggtttctctgccccattggagtca
ccgcctgcagccgcgcccaaggtcgaagccaaacctgtaaaagcggccagcgaagtcaag
cctggtttcttcagccgtctgtttgcagccataggttctctctttggcggtgacaacacc
gaaaccgaagagaagaaggccccagcccgtaatggccgtcagcagaacacccgtggtcgt
aaccgtcgcaacgacaaccgtcgtgacgatggccgccaggaaggtcgcagcgccgacagc
cgccgtgatgacagtcgtcgtgaagacggtgacaaacgtcgcagctctgacagccgtcgt
ggccgtaacaagccggaacaggccgacgacaagcagctgcgtgacaagagtgacaagcca
cgtgacgaaagacccaagcgtgagcgtgcgcccaaacgtgaaaagccagaaactgttgaa
gcagccgatgatgcggtagagccaaagcaggaagccgtgcgtgaacgtcgtcagcgccgt
aatatgcgccgtaaagtgcgtttggatgatggtgctgcccaggaaaatctggatgccgtt
aacgcgcaggaatccactgaagatactgccgctgaatcaacccaggttgtggctaaagac
aagtctgacgagaagcaaacccgcagtcgtcgccagcctcgcaagccaaaagtggaagaa
aaagccgctgaaaccgaacaggacgtcactgatgccgcaaacagtagcgacgcagctgtt
gccaccaccgacgtggtcgccgctcctgtcgtcgaagctgtgagtgaagtgggcactgca
gcaacagacatgttggattcagacgctcaagctgctgacgacgctcaggacgacaccgac
ggcgaagacaagccacgccgtgatggccgtgacggtcagcgtcgcagtcgccgcagccca
cgtcatctgcgtgctgcaggtcaacgacgtcgccgcgatgagcaagagcagcaaaccggc
gccgaaggtggtgaattggctcaggccgaattggatctgccacaggccgatgttgatgct
gccggcgctcctgccgctgcacctcaggatgttgttgcgaaagacactgcagcttcagaa
gtcgttactcaggaaagcgtgcttgaaaaggccgaagaaactgccgatgtggttatcgtt
aacgatactcccaaagcagaagcgcctgtagccggagccgttgtcgctgacacagccgct
gaggtagtggtcgaggttgcgccagccgcagcagtcgttgacacacctgttgccgcagtt
gaagcacctgttgccgaaacggcagccccagtagttgaagacgctgtagttgaagcccca
gtagttgagactgctgcacaggcgccggctgtggctgtagaaagcaacgccgttgaaacc
aaggctgaagaagctaaagccgccgagcccaaagctgctgaacctaaagctgcggaaaaa
gtgacttcaactgccccgatggccaaacccgcagcagtgatgccagcccgcgtcaaaccg
gttgaaaagcctgtcgcagatgtcgcagctgatattgcccccaccaaggcaactgccgct
ccagcccgccccgcaggcagccgtttcggtagcatggtaagttcagaaatgaccaagcca
agtattgaagcccgcgaacaggttgctacgcccaagggacgtgagtatgaagctgcaagt
actgacgccagcagtgccaaggtgcaaagcagtaacagtgctggctcagatatggcccgc
ccgtaa
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