Shewanella amazonensis: Sama_2280
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Entry
Sama_2280 CDS
T00445
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
saz
Shewanella amazonensis
Pathway
saz02020
Two-component system
saz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Sama_2280
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sama_2280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saz03021
]
Sama_2280
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
saz02035
]
Sama_2280
Transcription machinery [BR:
saz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sama_2280
Bacterial motility proteins [BR:
saz02035
]
Flagellar system
Flagellar assembly proteins
Stator
Sama_2280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
CT_C_D
DUF3263
TY-Chap3
DUF1390
Motif
Other DBs
NCBI-ProteinID:
ABM00486
UniProt:
A1S7X9
LinkDB
All DBs
Position
complement(2745826..2746545)
Genome browser
AA seq
239 aa
AA seq
DB search
MNKAAAYTSMESKTSIVEQYAPLVKRIAHHMLARLPASVQLDDLLQAGMIGLLEASAKFD
GGKGAKFETFAGIRIRGAMLDEIRKGDWVPRSVHRNQRRVAQVIDELEQELGRDARDTEI
AERLDMSMEEYHHILNDVSVGKIIGIEDLGVSHDVLVPDGEQTNDIYDDLAQSQFQQALA
DAIRQLPERDALVLSLYYDEALNLKEIGAILDVSESRVCQIHSQAMLRLKGKLKHWTQV
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcggcgtatacctccatggagagtaaaacctccatcgttgaacagtac
gcaccgctggttaaaagaatcgcgcaccatatgttggccagattgccggcatccgtacag
ttggacgacttgctgcaggcgggcatgattggcctgcttgaggcatcggccaaatttgac
ggcggcaaaggcgccaagtttgaaacctttgctggcattcgtattcgtggtgccatgttg
gatgaaatccgtaaaggtgattgggttccacgttctgttcaccgtaatcagcgcagagtc
gcccaggtgatagacgaactggaacaagagctcggacgtgatgcccgggacacagaaatt
gccgaaagacttgatatgtcgatggaggaataccatcatatcctcaatgatgtttctgtt
ggtaaaatcatagggatagaagatttaggcgtatcacatgatgttctggttcccgacggg
gagcaaaccaacgacatttatgatgacctggctcagagccagttccagcaggccttggca
gatgccattcgccagttacccgagcgggacgcgctggtgttatcactttattacgatgaa
gcactgaatttaaaagaaataggcgccattcttgatgtgagtgagtcgcgggtatgccag
atccacagtcaggctatgctcaggctcaaaggtaagctcaagcattggacacaagtataa
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integrated database retrieval system
