Shewanella amazonensis: Sama_2404
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Entry
Sama_2404 CDS
T00445
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_2404
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sama_2404
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sama_2404
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABM00609
UniProt:
A1S8A2
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All DBs
Position
complement(2887909..2889132)
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AA seq
407 aa
AA seq
DB search
MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL
ARLLADEVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN
AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT
RQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLL
GKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLV
ATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLLVAL
EHYLDRRLPQQWYPGFEPDLSIRHERPHSLSKAAQKQKARKRALAKR
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttgctgcttttactctgccgtctcccttggctaacaatctcgctaaactgggc
tttgtcgagcccaccgaggtacaggccggtgccatccccatgatgttggccggggatgac
ctgatggtgaaagcggctaccgggacgggtaaaaccgccgcttttttgctgccgatactt
gcccggctgcttgctgacgaggtggcaagccgcaacctgcctgcgcccagagccctggta
ctggtgcccaccagggagctgtgccaacaggtttatgatgccgccaaagcgctggcgaaa
ggcagcgccgtgcgtattgcccaggtttatggtggtgtgcccctggaaagccagctcaat
gccatcaagggcggcgtggacttgatggttgcaacgccggggcgtttgctcgaccacctg
aaaaaacgcaccctcagaatcgataccgtcagtcagttggtgtttgacgaggccgaccgt
atgctcgatatgggctttgaggatgagatccgcgcgctggtgaaaaagctcgccaaaacc
cggcaaactgcgctgttctcagccaccttgggggacaatgtctggcagttggccaagagc
ctgatggattcgcccaagctgctggaaatcgccgcggcgaaagatgccaagccactgatt
gaagagcaggtttatcagctcgacagcgagcgcaagttcgaatttatctgccacttgctg
ggtaaaaacagctggtctcaggtgcttattttcagccgtaccaaagaaggggccgataag
cttacggccaaactggtagaggctggtcacagcgccgttgccatgcacgccgacctgagc
cagcgtcagcgggagcaaaaccttgccgacttcaaggcggccgatgcgcgggtattggtg
gcaactgacgtggccgctcgggggttggatatacaggcgctgccctgcatcatcaatgtc
gaactgccctttaaaaaagaagattacgtacatcgcatcgggcgcactggccgggctggc
agcgccgggcttgccatcagtttgctggatgttgccgacgagcctttgctggtggcgctt
gagcactacctcgaccggcgcttgcctcagcagtggtatccgggctttgaaccggatttg
tccatccgtcatgagcgtccccacagcctcagtaaagcggcacaaaaacaaaaagcccgg
aagcgggctttggcgaagcgctga
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