Shewanella amazonensis: Sama_2447
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Entry
Sama_2447 CDS
T00445
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saz
Shewanella amazonensis
Pathway
saz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Sama_2447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_2447
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sama_2447
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Sama_2447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABM00652
UniProt:
A1S8E5
LinkDB
All DBs
Position
complement(2945111..2946454)
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AA seq
447 aa
AA seq
DB search
MSFDSLGLAAPLLQTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL
KQLSDKGLRGGIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQALAA
GVDILVATPGRLLDLTGQFGLSLASVGTLVLDEADRMLDMGFAPDIEKIRRQLGPHQSAM
FSASFAQRERELAERWLSNAVSLAAKDTGRIPQQLALEVFMLDKPRWAEFVAELVGKRNW
RQALVFVSSREESNTLVAELALDGLQAAAFHGEKTQGARRRGLDEFKSGKLRLLVATDVA
ARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVIVLSPEMRADLPLLKALCP
ALPEVITPEGYSPKDPLPQRYRDGALSTPGSKPANRSGRNAGQRPGTRTGSRTGSRTGGR
TGSSNGSPRQSGKPARQGNAPKRQARG
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgattctctgggattggcagcacctctgctgcagacgctgatacagtgcgga
tatcgtacgccaaccgaaattcaggcccagagtatccctgtgctcctcagtggccgggat
ttgattgcggtagcccaaaccggcagcgggaaaacggcggcctttgcgttgccgatattg
aagcagctctcggacaaggggctgcgtggcgggatacaggcgctggtgttggtgccaacc
cgggagctggctgtgcaagtggccgatgcctttacgcgctacagtgccgggttggggctg
acgaccctcgccgtttacggtggggtgaatatccgtccccaacgccaggcgctggccgcc
ggggtggacatactggtggccacaccggggcggctgttggatttgaccggtcagtttggt
ctgtctcttgcgagtgtcggcacccttgtgctggatgaagccgaccgcatgctggatatg
gggtttgcccccgacatagaaaagatacgccgccagctggggccgcatcaaagtgccatg
ttttcagcaagctttgcccagcgggagcgtgaactggctgagcgctggctctccaatgca
gtcagccttgccgccaaagacaccggccgtattccacagcagcttgccctcgaagtcttt
atgctcgataagcccagatgggccgagtttgtcgccgagctggtgggaaagcgcaactgg
cgccaggcgctggtgtttgtctcctcccgggaggagtccaataccctggtggcagaactg
gccctcgatgggctgcaggcggccgcatttcatggtgagaaaacccagggtgccagacgg
cgcggtctggatgagttcaaatccggcaaactcagattgctggtggcaaccgacgtggca
gccagggggctggatatcgaagacttgcccgtggtaataagtcttgggttgccccacggt
gaagaagacctgatacatcgccttggccgcagtgcccgagccggccgggaaggcctggct
gtgatcgtcttgtcacctgagatgcgcgccgatttgccgctgctgaaagcgctttgcccg
gcactgccagaggtgatcacccctgagggatacagccctaaagacccattgccccagcga
tatcgcgacggggctttatcaacgccgggaagcaagcctgccaataggtctgggcgaaat
gcagggcagcgcccaggcactcgcacaggtagccgcacgggcagtcgtacaggtggacgg
actggcagcagcaatggctcaccgcggcaatcaggaaaacctgcccggcaaggaaacgct
ccaaagcggcaagcccggggctga
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