Shewanella amazonensis: Sama_2742
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Entry
Sama_2742 CDS
T00445
Name
(GenBank) superfamily II DNA and RNA helicase-like protein
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_2742
Enzymes [BR:
saz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Sama_2742
Ribosome biogenesis [BR:
saz03009
]
Prokaryotic type
rRNA helicases
Sama_2742
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABM00945
UniProt:
A1S988
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Position
3276377..3278218
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AA seq
613 aa
AA seq
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MLFEDFQLDPELLESLKAMGHNTPTTIQRMTIPLAMEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRRPGQPRVLVLTPTRELASQIHRYASHLATNLELDIKLITGGVPYGPQEEML
KSNVDILVATPGRLLEYLDKGHFSAELVEVLVIDEADRMLDMGFGEVVKTIAVEASGRKQ
AMLFSATLEGGGVGSFARELLNEPMFVESEPPRSEKAKIHQWIHLADDKDHKFALLTHLL
KQEEVKRAIVFCKTRDVVASLEGQLQQAGIACAFMRGDMDQKKRFQALGRFTKGEVNVLL
ATDVAARGIDIEDITHVINFDMPRSADTYVHRIGRTGRAGAKGTAISLVEAHDMRILGKV
ERYIEQPLKRRVIEELRPKHKEAKVPTKKKVKAKDAKAKAKNAKPKAAPGRGPATPNAKT
ADSRGGDNVRSGGRASTRRTGTDEKGDGLDKHERRGHDKQERRSHDKGDTGRSQHGARER
TEGQSYASRDGNPRGAKREVGEKTPHSRSDKRHQDTDRQSARGYQSTERSPAQGKARSGS
QSSDRANAEGKPRYNAQGSERNGSKSSDRANAEGKQRYNAQGKDGKRSEKSGDYRSSAPK
GSGGKSRKPSKAD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgctatttgaagatttccaattggaccccgagctgctggagtccctgaaagccatgggg
cacaacacccccaccaccattcagcgtatgaccatcccccttgccatggagcaaagggat
attctggcgcgcgctccaacagggactggcaagactgccagctttttgctgcctgcgttg
cagcatctgatagatttcccccgccgtcgtccgggtcaaccccgggtgctggtattaacc
ccaacccgtgagctggcaagccaaatccatcgctacgccagccatttggccaccaatctg
gaattggacatcaagctgatcaccggtggtgtgccctatggcccacaggaagagatgctc
aagagtaacgtcgatatcctggtggcaaccccgggtcgcctgttggagtacctggacaag
ggccatttcagcgccgaactggtggaagtactggttatcgatgaagccgaccgcatgttg
gatatgggctttggcgaagtggtgaaaaccatcgccgtggaagccagtggccgtaagcag
gccatgctgttttccgccactctggaaggtggcggcgtgggcagctttgcccgcgagctc
ctgaacgaacccatgtttgttgagtctgagccgccccgcagtgaaaaagccaaaatccat
cagtggatacatctggccgacgacaaagaccacaagtttgccctgctgacccatctgctc
aagcaggaagaagtcaagcgggccattgttttctgtaaaacccgtgacgttgtggcgtcg
ctggaaggccagctgcaacaggcaggtattgcctgcgcctttatgcgcggcgacatggat
cagaaaaaacgtttccaggcactgggtcgctttaccaagggtgaagtgaacgtgctgctg
gccaccgacgtggctgcacggggtatcgacattgaagacatcacccatgtcatcaacttc
gatatgccacgctccgccgatacctatgtgcaccgcattggccgtaccggccgtgcaggt
gccaagggcaccgccatttctttggtggaagcccacgacatgcgcattctgggcaaggtc
gagcgttatattgagcagccgctcaagcgcagggtgattgaagagctgcgccccaagcac
aaggaagccaaggtgcccaccaagaaaaaggtcaaggccaaggatgccaaagccaaggcc
aaaaatgccaagcccaaggcagcccccggccgtggtccggctacacccaacgccaagacc
gcagacagcaggggcggcgacaacgtccgttctggcggcagagcgtcgacgcgccgcact
ggcactgatgagaagggcgacggtctggacaaacacgagcgccgaggccatgacaagcag
gaacgcagaagtcacgataagggcgatacgggccgcagccaacatggcgcacgtgagcgt
actgaaggccagagttatgcctccagagacggcaatccccgtggcgccaagcgcgaagtc
ggtgaaaaaacgccccatagccgtagcgacaagcgtcaccaggatactgaccgtcaaagc
gccagaggttatcaatcgaccgagcgcagcccagcccagggcaaagcgcgcagtggctcg
cagagcagcgatcgcgccaatgctgaaggaaaaccacgttataacgcccagggcagtgag
cgtaacggctccaagagcagcgatcgcgccaatgctgaaggaaaacagcgttataacgcc
cagggcaaggacggtaaacgcagtgagaaaagcggcgactaccgctcgtctgctcccaaa
ggtagcggcggcaaaagccgcaaaccctcaaaagcggattaa
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