Shewanella amazonensis: Sama_3032
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Entry
Sama_3032 CDS
T00445
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
saz
Shewanella amazonensis
Pathway
saz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Sama_3032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saz03019
]
Sama_3032
03009 Ribosome biogenesis [BR:
saz03009
]
Sama_3032
Messenger RNA biogenesis [BR:
saz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Sama_3032
Ribosome biogenesis [BR:
saz03009
]
Eukaryotic type
Pre-60S particles
RNases
Sama_3032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ABM01235
UniProt:
A1SA28
LinkDB
All DBs
Position
complement(3608130..3608675)
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AA seq
181 aa
AA seq
DB search
MAADAKNLIWIDLEMTGLEPEVDRILEIATLVTDQDLNILAQGPVIAIHQSDEVLAAMDD
WNQQHHGASGLIERVRSSQYTEADAIAQTIDFLSLHVPKGVSPMCGNSVGQDRRFLNKYM
RELEDFFHYRNIDVSTIKELVKRWDPEVMKGFKKQGTHQALLDIQESIAELQFYRDKVFK
I
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacgcaaaaaatctgatttggattgatcttgagatgacaggattggagccc
gaagtggaccggatcctggagattgccaccctggtaaccgatcaggatctgaacatcctg
gcccaggggcctgtgatagccattcatcagtctgacgaggtgctggcggccatggatgat
tggaatcagcagcaccacggtgcctcgggtctgatcgaacgtgtacgaagcagtcaatac
accgaagccgacgccattgcccagacaattgatttcctgtcgttgcatgtccccaagggc
gtttcacctatgtgtggtaacagcgtagggcaggacagacgtttcctgaacaagtacatg
cgcgaactggaagattttttccactacagaaatatcgatgtcagcactatcaaagagttg
gtaaaacgctgggatccagaagtgatgaaaggcttcaaaaagcaaggtacccaccaggcg
ctgcttgatattcaggagtccatcgccgaactgcagttctatcgcgacaaagtatttaaa
atttga
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