Shewanella amazonensis: Sama_3465
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Entry
Sama_3465 CDS
T00445
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
saz
Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
saz03021
]
Sama_3465
Transcription machinery [BR:
saz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sama_3465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GntR
2Fe-2S_thioredx
UCR_14kD
HTH_19
HTH_DeoR
HTH_25
UPF0231
Motif
Other DBs
NCBI-ProteinID:
ABM01668
UniProt:
A1SBB1
LinkDB
All DBs
Position
complement(4095007..4095864)
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AA seq
285 aa
AA seq
DB search
MTGQTQSMALMVPQGASSLEAYIHSVNSMPMLEAEQEYQLAKRLQETGDLQAAKQLIMSH
LRFVVHVAKSYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKQRLGWFSDDEVAMVAENLGVSKDDVTEMESRMAA
QDQAFDLVNDHDDDEGFAPVHYLEDHSSDLAANIENDNWESNAQNRLIAAIKTLDERSQH
ILRARWLDDDKVTLQELAEQYQVSAERIRQLEKNAMNKLKARMEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgactggacaaacgcaatcaatggcactgatggtcccccagggagccagtagtcttgaa
gcttatattcactcggtcaacagcatgcccatgctggaggcggagcaggagtatcagctc
gccaagcgtttgcaggaaaccggtgacctgcaggcagcaaagcagctgattatgtcccac
ctgcgctttgtggttcatgtggccaagagctactcaggctatggcctgccacaggccgac
ctgatccaggaaggcaacataggcctgatgaaggccgttaaacgtttcgaccctgatgtg
ggtgtgcgtttggtgtcttttgccgtgcattggatcaaagcagaaattcacgaatatgtg
ctgaaaaactggcgcattgttaaagtggccaccaccaaggcccagcgcaagctgttcttt
aatctgcgtaaagccaaacagcgtctgggttggttctcggatgacgaagtggccatggtg
gcagaaaacctgggtgtgtccaaagacgatgtgaccgagatggagtcgcgtatggcggct
caggatcaagccttcgatttggtcaacgatcacgacgacgatgaaggctttgctccagtg
cactatctggaagaccactcttccgatttggccgccaacatcgaaaacgacaattgggaa
tccaatgcccagaatcgtttgattgctgccattaagactctcgatgagcgcagccagcac
attctgcgtgcccgctggttggatgacgacaaggtcactctccaggagctggcggagcag
tatcaggtgtcagctgagcgtattcgtcagcttgaaaagaacgccatgaacaagctcaag
gcgcgtatggaagcctga
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