Stygiolobus azoricus: D1868_08175
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Entry
D1868_08175 CDS
T06313
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
sazo
Stygiolobus azoricus
Pathway
sazo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sazo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1868_08175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sazo03019
]
D1868_08175
Messenger RNA biogenesis [BR:
sazo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
D1868_08175
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
D1868_08175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Zn_ribbon_3
FtrD-like
EXOSC1
Zn_ribbon_NUD
Zn_Ribbon_TF
S1
HVO_2753_ZBP
DZR
ECR1_N_2
Zn_Tnp_IS91
HypA
Cas12f1-like_TNB
Prok-RING_1
DUF3797
DUF7117
Zn_ribbon_NOB1
DUF7130
A2L_zn_ribbon
DUF7129
Zn_ribbon_8
Zn_ribbon_TiaS
Zn_ribbon_LysW
Zn_Ribbon_YjdM
Zn_ribbon_RPAB4
Motif
Other DBs
NCBI-ProteinID:
QGR20543
UniProt:
A0A650CRZ2
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Position
complement(1480038..1480604)
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AA seq
188 aa
AA seq
DB search
MRKQGELLLPGDELNVLEEFVPSEGTYEKDGKVYSSVVGKAFYDMINRKVNSIAFKRPGI
VMIKKAKYVLGIVVGLKEDSALVNIYSIEDKQTESITGYLHISQINNKYLNSISEAVKVG
DIIRAKPLNSTIPIALTLKQRDLGVVYAKCSICGTKMTKHDEEHLRCPNCGNIESRKIAL
LQVKKGGS
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
ttgagaaagcaaggagaattattgttaccgggtgacgagttgaatgtattggaggaattc
gtaccgagcgaagggacttacgagaaggacggaaaggtttactccagtgtcgtagggaaa
gcgttttacgatatgataaatagaaaggtaaattcgatcgcctttaagagacctggaatt
gttatgataaaaaaggcgaagtatgtgctaggaattgtagttgggcttaaggaagactca
gccctagtaaacatttatagtattgaggataaacagacagagtctattacaggttaccta
catatttctcagataaataacaagtacttaaactcgatatccgaagctgttaaggtcgga
gatataataagggctaagcccttaaactccacaatccctatagcgttaactctaaaacag
agggatctgggtgttgtttacgctaaatgctcgatatgcggtactaaaatgactaaacat
gacgaagaacatttaaggtgccccaactgtggtaatattgagtctagaaaaatagctcta
cttcaggtgaagaaaggtggaagttaa
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