Salinimicrobium sp. 3283s: VS868_01940
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Entry
VS868_01940 CDS
T10578
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sazs Salinimicrobium sp. 3283s
Pathway
sazs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sazs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS868_01940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sazs03019
]
VS868_01940
Enzymes [BR:
sazs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS868_01940
Messenger RNA biogenesis [BR:
sazs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS868_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
AAA_19
P-loop_SecA
UvrD-helicase
AAA_22
ERCC3_RAD25_C
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
WZL89535
LinkDB
All DBs
Position
437960..439165
Genome browser
AA seq
401 aa
AA seq
DB search
MSFKKLNLDEALLKALETQGYDTPTPIQKQAIPVVLSGKDLLGVAQTGTGKTAAFGLPIL
QLLNEKKFSGKGVRSLILTPTRELAIQIDESLAAYGKHTRLKHSVIFGGVSQHSQVKKLK
RGVDILVATPGRLLDLMNQGFINLKTLEIFVLDEADRMLDMGFIHDVKKVIKSLPEKRQT
LFFSATMPDEIQNLAKMMLKNPVKVEVTPPSSTVDKIDQRVYFTNKPDKRKLLLHLLESN
GIESALVFTRTKHGADKVARFLDKAKINSAAIHGNKSQNARQNALKNFKSGKLNVLVATD
IAARGIDIDELGHVFNFDLPNVPETYVHRIGRTGRAGNEGIAISFCAADERKELKDIEKL
AAIKIPVVEEHPYPMDLNAEPAPVATGNNRNRNNNRQRRRR
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttaaaaaattaaatttagatgaggccttacttaaggcgctcgaaactcagggt
tatgatacgcccaccccaatacaaaaacaagccattccagtagttctttcaggaaaagat
cttttaggagtagcccagaccggaacaggaaaaacagccgcctttggccttcctatcctc
cagttattaaatgagaaaaaattctctggaaaaggagtaagatccctaatccttacccca
acaagggagctcgccatacaaatagacgagagccttgcagcatacggcaagcataccagg
cttaagcattcggttatttttggaggtgtttcacaacattcgcaggtcaaaaagcttaaa
cgaggggtagacattcttgtcgccaccccaggccgcttactggatcttatgaaccagggc
tttatcaaccttaaaaccctcgagatctttgttcttgatgaagccgacaggatgttggat
atgggttttattcacgatgtaaaaaaggttattaagagcctgccagaaaaaaggcagacc
cttttcttttcggccactatgcccgatgaaatacagaatctggctaagatgatgctgaaa
aatccggtgaaagtagaagttactccgccgtcttcaacagtagataaaattgatcaaagg
gtttattttaccaacaaacctgataagagaaagttactgctccatctcctggaaagcaat
ggcattgaaagcgccctcgtctttacccgtacaaagcacggtgctgataaagttgcgagg
ttcctggataaagcaaagatcaattcggcagctattcacgggaataaaagtcagaatgcg
aggcaaaacgcattaaagaacttcaaaagtggaaaactgaatgtactggtagcaaccgat
attgccgcccgcggaatcgacattgatgagttaggacatgtgtttaacttcgaccttcca
aacgttcccgaaacttacgtacaccgaattggacgtaccggccgtgccggaaacgaaggt
attgccatctcgttttgtgccgccgatgagcgcaaggaattaaaagatattgaaaaactg
gcagctattaaaatcccggtggtagaggaacacccctaccctatggatctaaatgctgaa
cctgcaccggtagctacaggaaacaatcgcaaccgcaataacaacaggcaaaggagaaga
aggtag
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