Salinimicrobium sp. 3283s: VS868_11540
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Entry
VS868_11540 CDS
T10578
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sazs Salinimicrobium sp. 3283s
Pathway
sazs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sazs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VS868_11540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sazs03019
]
VS868_11540
03009 Ribosome biogenesis [BR:
sazs03009
]
VS868_11540
Enzymes [BR:
sazs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VS868_11540
Messenger RNA biogenesis [BR:
sazs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VS868_11540
Ribosome biogenesis [BR:
sazs03009
]
Prokaryotic type
rRNA helicases
VS868_11540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WZL88231
LinkDB
All DBs
Position
complement(2623057..2624895)
Genome browser
AA seq
612 aa
AA seq
DB search
MNNFELLGLNDALLQAIKDMGFENPSEVQEKAIPILLQEETDMVALAQTGTGKTAAFGFP
LIQKINVDSRKTQGLILSPTRELCLQITNELKNYSKYFKGLNTVAIYGGASITDQAAQIK
KGAQIIVATPGRMQDMVNRRLVDISNIQYCILDEADEMLNMGFYEDITEILSHTPSEKST
WLFSATMPKEVATIAKKFMRTPVEITVGTKNMGTSNVSHEYYIVNARDRYAALKRLADAN
PDIFSVIFCRTKRDTQKVAEQLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGVSMVIVSKSEVRKIKGIERI
IGQSFERKEIPDGREICEVQLFHLANEISKTEINHEIDKYLPSIAELFEGLTKEELLKKF
FSVEFTRFFNYYNNAQDLNAKGSTEVYEDEGDSTRFFINVGAKDDFDWMSLKDFLKATLD
LGRDDVNRVEVKDSFSFFNVDSSKAEEVLRIFQDFKHQGRHINVEITKKSAGKERSGGGG
RKGGGYKGRDKGERSFDKPSRGGDKGRRRSSNAPSGGKRRSSDAGSGGRKGKKSGSRSSS
IESSIKRRRSKK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaataattttgaattattaggattgaatgatgccctgttacaggcaattaaagacatg
ggttttgaaaacccgagcgaagtacaggaaaaagcaatcccaattttattgcaggaagag
acagatatggtggctcttgcacaaaccggaaccggaaaaaccgcagcatttggttttccg
cttatccaaaagatcaatgtagacagtagaaagacacagggccttattctttctccaacc
cgtgagttgtgtttacaaattaccaacgaattaaagaattactccaaatattttaagggc
ctaaataccgtagctatatacgggggcgccagcattacagatcaggctgcgcaaatcaag
aaaggtgcacaaattattgttgccactcccggccgtatgcaggatatggtgaacagaagg
ctggtagacatttcgaacatccagtattgcatccttgatgaagccgatgagatgctgaat
atgggattctatgaagatatcactgagatcctttctcacacaccttcagaaaagagcacc
tggttattttcggctaccatgcctaaagaggttgctaccattgctaagaagtttatgcgc
actccggtagagatcactgtaggaaccaagaatatggggacttcaaatgtctctcatgag
tattatatcgttaatgcccgtgaccgttacgcagctctaaaaagacttgcagatgctaac
cctgatattttttcggtaattttttgccgtaccaagcgcgacacccaaaaggttgccgag
cagttaattgaagatggctataacgctgcagcccttcacggcgatcttagccagaatcaa
cgtgacctggtaatgaaaagctttagggcgagacaaatccagatgctggtagctacagat
gttgctgcccgcggaattgacgttgatgatatcacgcacgtaattaactatcagcttccc
gatgagattgaaacttacacccacagaagtggccgtaccggtagagccggaaaaagcggg
gtttctatggttattgtttccaaaagcgaagtacgtaagatcaaaggcatagaacgcatt
attggtcagtcgtttgagagaaaagaaatccccgacggaagggagatttgtgaagtacag
ctctttcaccttgccaatgaaattagcaagaccgagatcaaccacgagattgacaagtac
ctgccaagcatagccgaactttttgaaggccttaccaaggaggaattactgaaaaaattc
ttttcggttgaattcacccgattcttcaactactataataatgcgcaggatttaaatgca
aaaggttctactgaagtttatgaagatgaaggcgacagcacaagattctttatcaatgta
ggtgccaaagacgattttgactggatgagcctgaaagatttcttaaaggctactcttgat
cttggaagagacgatgtaaaccgggtggaagtaaaagacagcttttcattctttaatgta
gacagttctaaagccgaagaggtgcttcgcatcttccaggactttaagcaccaggggcgt
cacatcaatgtagagattactaaaaaaagtgccggaaaagaacgcagcggtggcggcggt
cgtaaaggcggtggttataaaggaagagacaaaggagaacgcagctttgacaaaccttca
agaggaggcgacaaaggtcgaagacgctcatctaacgctccttccggaggaaaaagaaga
tcatctgatgcaggatctggcggacgcaagggaaagaaaagcggtagccgcagcagcagc
attgaaagttcaataaaaaggagaagatcaaaaaagtaa
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