KEGG   Sulfurospirillum barnesii: Sulba_0389
Entry
Sulba_0389        CDS       T02139                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sba  Sulfurospirillum barnesii
Pathway
sba03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sba00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sulba_0389
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sba03021]
    Sulba_0389
   03400 DNA repair and recombination proteins [BR:sba03400]
    Sulba_0389
Enzymes [BR:sba01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sulba_0389
Transcription machinery [BR:sba03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sulba_0389
DNA repair and recombination proteins [BR:sba03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sulba_0389
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 DUF6675
Other DBs
NCBI-ProteinID: AFL67708
UniProt: I3XUT4
LinkDB
Position
358319..362842
AA seq 1507 aa
MTRLEPIEIHEESRPRDFKAFQLKLASPEKIRSWSYGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGIKCEKCGVEVTSTKVRRSRMGHIELVTPVAHIWYVNS
LPSRIGTLLGVKMKDLERVLYYEAYIVEQAGDAFYDAENKNKVAVFDVLNEEQYQSLEQR
FSDTGFVAKMGGEVIRDLLASLDLVEILSQLKEEINQTSSEAKKKTIVKRLKVAEAFLNS
GNRPEWMMITMLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNARLKRLMELDAPEI
IIRNEKRMLQEAVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPNLRMDQCGLPKQMALELFKPHLLARLEEKGYATTVKQAKKMIDMKTNEVWE
CLAEVVKGHPVMLNRAPTLHKLSIQAFHPVLIDGKAIRLHPLVCSAFNADFDGDQMAVHV
PLSQEAIAECKILMLSSMNILLPASGKAVTVPTQDMVLGLYYLTLEKKDAKGSNKIFSNV
DQVHIAIDSGFLDIHAKIKTIVGDRVLFTTAGRLILKSILPDFVPEEFWNRVLKKKNIGG
LVDYIFKEGGIGITAGFLDNLKNLGFRYATRAGISVSIDDIRVPDTKVKKIKEAKKKVRE
IQKQFSSGLLTEQERYNKIIDIWTDTNNDVASEMMKLTESHKGGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLIDVAQNVKVTMDDCGTHEGVEITEISESGELVESLYERATGRVLAEDVIDTITN
EVLFTEGTLIDEKKAQALKDASIKSVVIRTPITCKAKKGVCSKCYGTNLAEGTLVRPGEA
VGIISAQSIGEPGTQLTLRTFHIGGTASTESQDRQVIAQKEGFIRYYNVKTYVTKEGKNI
VANRRNAAILLVEPKIKALINGVIEIDTAHEETVITITGESETIKYTLRKSDFAKPNELA
GVSGKIEGKFYIPYNNGDSVEANESIVEVIKEGWNVPSRIPYASELKVKNGEPIIQKIHA
DAKGIVKYYKLRGDYLDRIHDIVKGHIVKEKGIFAVVADDDDREAIRHYIPRDSIIDIND
NSVVDTKTLLAYPSNNEQITIADWDPYSTPIIAEDAGTVTFEDIEPGISATEQFDEMTGQ
SRLVINEYLPSGMKPTIVIVNKLGEIIKYQLEPKTAIFVQNGAVVGLADLIGRTPKAIAK
SKDITGGLPRISELFEARRPKNATVIAEIDGTIRFGRPLRSKERIIIEAKDGTSVEYLVD
KNTQIHVQAGEFVHAGERLTDGVISSHDILRIMGEKALHYYLICEIQQVYRGQGVAINDK
HIEVIVSQMLRQVRIVDSGDTKFIMGDLISRRRFREENEAVMKMGGEPAIAEPTLLGVTR
AAVGSDSVISAASFQETTKVLTEASIAGKMDMLEDLKENVILGRMIPVGTGLYQNKSFNL
ELNPSRG
NT seq 4524 nt   +upstreamnt  +downstreamnt
atgacacgactagaaccaattgagattcacgaagagagccgtcctagggattttaaagca
tttcaattaaaacttgcaagtcctgaaaaaattcgctcatggagttatggtgaggttaaa
aagccagaaacaattaattatcgaacactaaagcctgagcgtgatggtcttttctgtgcg
aaaatttttggacctgtaagagattatgagtgtttgtgtggaaaatacaaaaaaatgcgc
tacaagggcattaaatgtgaaaaatgcggtgtcgaagtcacgagtactaaagtacgacgt
tcacgtatgggccacattgaacttgttacacctgtagcacatatttggtatgttaactca
cttccaagccgtattggtacattgttgggtgtcaaaatgaaagaccttgagagggtactt
tattacgaagcttacattgttgaacaagcaggtgatgctttttatgatgcagaaaataaa
aataaagttgcagtgtttgatgttttaaatgaagaacagtatcaatcattagagcagcgt
tttagtgatacaggcttcgtggctaaaatgggtggtgaagttattcgtgatttattggca
agtttagatttagtggaaattttaagtcaattaaaagaagagattaatcaaacaagttct
gaagcgaagaaaaaaaccattgttaaacgtcttaaggtagcagaagcattcctgaacagt
ggtaatagacctgaatggatgatgattacgatgttgcctgtcttgccaccagatttaaga
ccactggtagcattagatggcggaaaatttgcagtctctgacgtgaacgatttataccgt
cgtgtaattaacagaaatgcacgtttgaagcgtttgatggaacttgatgctcctgaaatt
attattcgtaacgaaaaacgtatgcttcaagaagcggttgatgcgttgtttgataatgga
cgtagagccaacgcagttaaaggcgctaataagcgtcctttaaaatcgctctcagaaatt
atcaaaggtaagcaaggtcgtttccgtcaaaacttacttggtaaaagggtagacttttca
ggtcgttcggtaatcgttgttggaccaaacttgagaatggatcaatgtggtcttccaaaa
cagatggcactcgaattgttcaaaccacacttgttagcacgtcttgaagaaaaagggtat
gcaacaacggtcaagcaagcgaaaaaaatgattgatatgaagactaatgaagtgtgggaa
tgtttagcagaagtggttaaagggcatcctgtgatgcttaaccgtgcaccaacgcttcac
aaactttctattcaggcgtttcatcctgttttgatcgatggaaaagcaattcgtttgcat
ccacttgtttgttcggcatttaatgcggacttcgacggtgaccagatggcggttcacgtc
ccattgtcacaagaggccattgctgagtgtaagattttgatgctaagttctatgaatatc
ttgcttccagcttctggaaaagcggtaaccgttccgacacaagatatggttttgggtctt
tattatttaaccttagagaaaaaagatgcaaaaggttctaataagattttttcgaatgtg
gatcaagttcatattgccattgattctggttttttagatattcacgcaaagattaaaact
attgttggggatagagtactctttacgacggcaggtcgccttatcttgaaatcaattcta
ccagattttgtaccagaagagttttggaacagggtgttgaaaaagaaaaacattggtggt
ttggttgattatatttttaaagagggtggcattggtatcactgcaggattcttggataat
ttaaagaatttagggtttaggtacgcaaccagagcaggtatttctgtctcgattgatgat
attcgtgtacctgatactaaagtgaaaaagatcaaagaagcaaagaaaaaagtacgtgaa
attcaaaaacagttcagctcgggtctcttaacagagcaagagcgatataacaaaattatt
gatatttggacggatacgaacaatgatgtggcttctgagatgatgaaactcaccgagagt
cacaaaggcggctttaactccatttacatgatggcagactctggagcgagaggttctgcg
gcacagattcgtcagctagcaggtatgaggggtcttatggcaaaaccagatggaagtatt
attgaaacaccgattatttcaaacttccgtgaaggtctaaacgttcttgagtactttatt
tcaacgcacggtgcacgtaaaggtttggcggatactgcgcttaaaacagcgaatgcgggt
tacttgacacgtaaattgattgacgttgcacaaaacgttaaagtgaccatggatgattgt
ggtacacacgaaggtgttgagattacagaaatcagtgaaagtggcgagttagttgaatcc
ttgtatgagcgagcaacgggtcgtgttcttgctgaagatgttattgatacgattaccaat
gaagttcttttcacagagggaacattgattgatgagaaaaaagcacaagcactaaaagat
gcaagcatcaaatcagttgtgattcgtacaccgattacatgtaaagcaaaaaaaggtgtt
tgttcaaaatgttatggtaccaacctagccgagggaacgcttgttcgtccaggtgaagct
gtgggtattatttcagcacaatctattggtgagccaggaactcagttaacccttcgaacg
tttcacatcggtggtacggcatcaacggaatctcaagatcgccaagttattgcacaaaaa
gagggttttattcgttattacaatgtaaaaacgtatgtaaccaaagagggtaaaaacatt
gttgcaaatcgcagaaatgcagcgatattattggttgagcctaaaatcaaagcactcatt
aacggtgtgattgagattgatacagcgcacgaagagacagttataaccattacaggtgag
agcgaaaccataaaatatacacttagaaaaagtgattttgcaaaaccaaatgagcttgca
ggtgtaagtggtaaaattgaaggcaagttttatatcccttataacaatggtgatagtgta
gaagcaaatgaaagcattgttgaggtcattaaagagggatggaatgtgccaagtcgtatt
ccttatgcaagtgaacttaaagtgaaaaatggcgaacccattattcaaaaaattcatgca
gatgcaaaaggtattgtgaagtattataaacttcgaggcgattatttagaccgcattcat
gatattgttaagggacatattgttaaagaaaaaggtatttttgctgttgtcgcagatgat
gatgacagagaagccattcgtcattatattcctcgtgattctattattgatattaacgat
aacagtgttgtggataccaaaacattgttggcctatccgtccaataatgaacaaattacg
attgctgattgggatccgtattcaacacctattattgctgaagatgcgggtactgttacg
tttgaagatattgaaccaggtattagtgcaacagagcaatttgatgagatgacgggacag
agtcgtttggtgattaatgaatatttgccaagtggtatgaaaccaaccattgtgattgta
aataaactgggtgaaattattaaatatcagttagaaccaaaaacagcgattttcgttcaa
aatggtgccgttgttggtttagcagatttaatcggtagaacaccaaaagcgattgcaaaa
tcgaaagatatcacaggaggtcttcctcgtattagtgaactttttgaggcacgtcgccct
aaaaatgcaaccgtgattgctgagattgatggaaccattcgttttggacgtccacttcgt
tcaaaagagcgcattatcattgaagcaaaagatggtacaagtgtggaatatttagtcgat
aaaaatacacaaattcatgttcaagcaggtgagtttgtccatgcgggtgagcgacttacc
gatggtgtgatttcaagtcatgatattttacggattatgggtgaaaaagcactccactat
tacctaatctgtgaaattcagcaagtctatcgtgggcaaggtgttgccattaacgataaa
cacattgaggttattgtctctcaaatgttaagacaggtaagaattgttgacagtggcgat
accaaatttattatgggtgatttgattagccgtagacgttttagagaagagaatgaagca
gtcatgaaaatgggtggagagcctgctattgctgagccaacacttttaggtgtaacacgt
gctgccgttggtagtgatagtgttatttcagctgcatcgttccaagagacaaccaaagtt
ctaacggaagcgagtatcgctggtaaaatggatatgcttgaagatttgaaagaaaatgtt
attttaggacgtatgattccagtaggaacaggtctttatcagaacaaaagctttaatctc
gagttgaatccaagtagaggttaa

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