Sulfurospirillum barnesii: Sulba_1680
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Entry
Sulba_1680 CDS
T02139
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sba
Sulfurospirillum barnesii
Pathway
sba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sulba_1680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sba03400
]
Sulba_1680
Enzymes [BR:
sba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sulba_1680
DNA repair and recombination proteins [BR:
sba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sulba_1680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFL68968
UniProt:
I3XYE4
LinkDB
All DBs
Position
complement(1651759..1654728)
Genome browser
AA seq
989 aa
AA seq
DB search
MLQAAFYEFLQTKNDFQLLGVKGDKEAFLASEVALYCGKKSYVLPDLRANEGDDLLSFHE
EMVELLRVLHAFYQDASSKKILIAPLRTLLTPLPKAELFHTFTLEFGMRLHVERFREEMF
YWGYLAVDVVQGKGEISIRGDIIDIFPPDSDKALRISLFDDEVESIRFFDCESQKSAKDE
VESFALFPALFALDEERHTQMQRRIDTLKSDSFTKDIHSLGLWVLGESGAVYTEVFKTYL
SMDAVAECEEIALFDEESAQKLRTLVQIPESKQYREIAPSNIKTFIELHQKKKITLLAKN
EVLLRMVDVDALHVKWIQSERIVNIMSADEVILSLNKPTTKIKRKSARIVLDELKNGDYV
VHENYGIGIFKGLTQATVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYIGESGALVSVD
RLGKGSFQKLKAKTKERLLEIASEIVAIAAKREMIDGLCLNVDETEMAHFEADAGFVYTD
DQKRVIGEILSDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVRSGFQALLIAPTTLLCS
QHFKSLSQRFSKYNIKVTQLDRFTTAAQKQVILKELKSGALQVCVGTHSLFDVELFNPAL
VVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQYSQLLTPPSERED
VRTFVKEYDEKVIKEAIMREMRRGGQIFFVHNRIATIEAKRKELLSMMPSLRILTLHSEI
SASVTEKEMLHFEEKAYDVLLSTSIIESGIHIPNVNTIIIDSADHFGMADLHQLRGRVGR
SKRQGFCYFLVKEKEELSESAKKRLIALESNSYLGSGSILAYHDLEIRGGGNLVGEAQSG
HLKNIGYSLYLKMLEDAINALMGKTPIASREVDIKLSISAFISDMYIAEDRVRLELYRRL
SRCGSIHDVLEIEEEMVDRFGKLDVPTKQFLQLIEIKILATQHAIVLISNYGQTISIKYE
DEKKVTLQSRSRDDDDIIATVLTYLRSHA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
ttgttacaagctgccttttatgaatttttacaaacaaaaaatgattttcagcttttaggt
gtcaaaggggataaggaggcatttctcgcctccgaggttgccctttattgtggaaaaaaa
agttatgttttacctgatttaagagccaatgaaggcgatgatttactctcttttcatgaa
gaaatggtggagcttttacgtgtacttcatgctttttatcaggatgcttcttctaaaaaa
attcttatcgcacctcttcgaaccttgttaacacctttacccaaagctgaattgtttcat
acgtttacactcgaatttggtatgcgtttacatgtagagcgttttcgtgaagagatgttt
tattggggttatttagccgtagatgtggtacaaggaaaaggtgaaatttctattcgtggg
gatattatcgatatttttccacctgatagtgataaagctttaagaataagtctttttgat
gatgaagtagagagtatccgtttttttgactgtgaaagtcaaaaaagtgcgaaagatgaa
gtggagtcttttgcactcttccctgcactgtttgctcttgatgaagagcgtcatacccag
atgcaaagacgaattgataccttaaaaagtgatagctttaccaaagatattcactctctt
ggtttatgggtcttgggggaaagtggggcggtttatacagaggtatttaaaacatatttg
agtatggatgctgtggcagaatgtgaggagatagcgctttttgatgaggaaagcgcacaa
aagcttcgaactcttgttcagattcctgagtcaaaacagtaccgtgaaattgctccaagt
aatattaaaacctttatagaactgcatcaaaaaaagaagataacgcttttagcgaagaat
gaagttttactgcgtatggtggatgtggatgctttacatgtaaaatggattcagagtgaa
cgcattgtgaatatcatgagtgcggatgaggtgattctctctttaaacaaaccgacaact
aaaatcaaacgaaaaagtgcacgcattgtcttagatgagttaaaaaatggcgattatgtg
gtgcatgaaaattatggcattggtatatttaaaggcttaacgcaagccactgttttaggc
gcaacaaaagattttgttcttattgagtatttaggtgatgataaactccttttgcctgtt
gagaatttacatgtaatagaccgctacattggtgagagtggcgctttggtaagtgtggat
cgtttgggcaaaggaagttttcaaaaactgaaagccaaaaccaaagagcgacttttagaa
attgccagtgaaattgtcgcaattgctgcgaaacgtgaaatgattgatgggttgtgccta
aatgtggatgaaacggaaatggcacattttgaagccgatgctggttttgtttacacagac
gatcaaaagcgagtgattggtgaaattttaagtgattttaagagcggcaaaatgatggac
aggctcttaagtggagatgtgggatttggcaagactgaagtagccatgaatgctattttt
gcaaccgtacgcagtgggtttcaagcattactgattgcccctacaacgcttttatgttct
caacattttaaaagcctttctcagcgtttttctaaatataatattaaggtaacgcaatta
gaccgttttacgacagcagcacaaaaacaggtgattttaaaagagcttaaaagcggtgct
ttacaggtgtgtgtgggaacgcactccctttttgatgtggaactgttcaatcctgctctt
gtggtggtggatgaagagcataaatttggtgtgaagcaaaaagagaagctgaaaaatttt
agagaaaatgtgcatattctctccatgagtgcaacgcccattccacgaagtcttaatatg
gcgcttagttccattaaacagtattcgcagcttcttacccctcctagtgaacgagaagat
gtacgcacttttgttaaagagtatgatgagaaggtcatcaaagaggcaatcatgcgtgaa
atgagacgaggaggacaaatcttttttgtacacaatcgtattgctaccattgaagctaaa
cgtaaagagcttctctctatgatgcctagtttgcgcatcttaacgcttcactctgaaatt
agtgccagtgtgaccgaaaaagagatgttgcattttgaagagaaggcgtacgatgtgctt
ctaagcacctctatcatcgaatcaggcattcatatccctaacgtgaatacgatcattatc
gactcagccgatcactttggtatggcggatcttcatcaacttcgagggcgtgtaggtcga
agtaaacgtcaaggtttttgctacttcttagttaaagagaaagaagagctctcagaatca
gctaaaaaacgcctcattgcccttgaatctaattcgtatctgggcagtggctccatcctt
gcgtaccatgatcttgagatcagaggtggcggtaatttagtgggtgaagcgcaaagtggg
catcttaaaaatattggttattccttgtatcttaaaatgctcgaagatgcgattaatgct
ttaatgggtaaaacgcctattgcgtctcgtgaagtggatattaaactctctattagtgct
tttatcagtgatatgtacattgctgaagacagagtgaggttagagctttacagacgtttg
agtcgttgtggaagcattcatgatgtgttggaaattgaagaagagatggtggatcgtttt
gggaaattagatgttccgaccaaacagtttttacaattgattgaaattaaaattttagcc
acacaacatgcaattgttttgatttctaactatgggcaaactattagtattaagtatgaa
gatgagaaaaaagtgacgttgcaatcacgtagcagagatgatgatgatattattgcgacg
gttcttacctacttaaggagtcatgcatga
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