Capillimicrobium parvum: DSM104329_00721
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Entry
DSM104329_00721 CDS
T08390
Symbol
alkA_1
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sbae
Capillimicrobium parvum
Pathway
sbae03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSM104329_00721 (alkA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbae03000
]
DSM104329_00721 (alkA_1)
03400 DNA repair and recombination proteins [BR:
sbae03400
]
DSM104329_00721 (alkA_1)
Enzymes [BR:
sbae01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
DSM104329_00721 (alkA_1)
Transcription factors [BR:
sbae03000
]
Prokaryotic type
Helix-turn-helix
AraC family
DSM104329_00721 (alkA_1)
DNA repair and recombination proteins [BR:
sbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
DSM104329_00721 (alkA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
UGS34344
UniProt:
A0A9E6XTP8
LinkDB
All DBs
Position
724162..725646
Genome browser
AA seq
494 aa
AA seq
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MTEDFDRCYRAIRSRDPRFDGWFITAVTSTGIYCRPSCPAMTPKRENVRFYPSAAAAQQA
GFRACKRCRPDAAPGSPEWDGRADVVARAMRMIADGVVDRDGVPGLAAQLGYSVRQLQRL
LLAEVGAGPIAVARAQRAQTARVLIETTALSMTDVAFASGFASIRQFNDTVRAVFASSPT
DLRRRAAARDGTTPAPGAIAVRLPFRRPLCPDNLFGHLAATAVPGVEEVRGATYRRTLRL
THGAGIVELTPAADHVACRLMLADLRDLAAAISRSRWLLDLDADPVAVDEQLATDPALAP
IVRAAPGRRVPRCADGPELAVRAVLGQQISTAAARTYAARLVTAIGEPVEDRGGGLTHLF
PAPEALREVPVAMPASRRRTLAALLDALAGGRLDLGPGCDREAALDTLGRLPGFGPWTIG
TIAMRALGDPDAFVAGDLGVRRAAEALGLPATPGALTARSAAWRPWRAYAVQYLWSTGDH
EINRWPATSIQEAA
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaggacttcgaccgctgctaccgggccatccgctcgcgcgatccgcgcttcgac
ggctggttcatcaccgcggtcacgtcgaccgggatctactgccgcccgagctgccccgcg
atgaccccgaagcgggagaacgtgcgcttctacccgtcggcggcggccgcccagcaggcc
ggcttccgggcgtgcaagcgctgccgcccggacgctgcgccgggctcgccggagtgggac
gggcgggcggacgtcgtcgcgcgggccatgcgcatgatcgccgacggcgtcgtcgaccgt
gacggcgtccccggcctcgcggcgcagctcggctacagcgtgcgccagctccagcggctg
ctgctcgccgaggtcggcgcggggccgatcgcggtcgcccgcgcccagcgcgcccagacc
gcacgggtgctgatcgagaccacggcgctgtcgatgaccgacgtcgcgttcgcctccggc
ttcgccagcatccgccagttcaacgacacggtacgggcggtcttcgcgtcgtcgcccacc
gatctgcgccgcagggccgccgcgcgcgacggcacgacgcccgcgcccggggcgatcgcc
gtgcggctgccgtttcgccggccgctgtgcccggacaacctcttcggccatctcgccgcg
accgcggtgcccggcgtcgaggaggtccgcggcgcgacctatcgccgtacgctgcggctg
acccacggcgcggggatcgtggagctcacgccggccgccgaccatgtggcgtgccgcctg
atgctcgccgacctgcgcgacctcgccgcggcgatctcgcgctcgcgctggctgctcgac
ctcgatgccgacccggtcgccgtcgacgagcagctcgcgaccgacccggcgctcgcgccg
atcgtgcgcgccgcgcccggccgccgggtaccgcgctgcgccgacggtcccgagctcgcc
gtgcgggcggtcctgggccagcagatctcgaccgccgcggcgcggacctacgccgcgcgg
ctcgttaccgcgatcggcgagccggtggaggaccgcggcggcgggctgacgcacctcttc
ccggcccccgaggcattgcgcgaggtgcccgtcgcgatgccggcgagccggcggcgcacc
ctggcggcgctcctcgacgcgctggccggcgggcgcctcgatctcggccccggctgcgac
cgcgaggccgcgctcgacacgctcggccggctgcccggcttcggcccgtggacgatcggc
acgatcgcgatgcgcgcgctcggcgatcccgacgcgttcgtcgccggcgatctcggcgtg
cggcgggccgccgaggccctcgggctgccggccacccccggcgccctcaccgcccgctcg
gccgcgtggcggccatggcgcgcgtacgccgtgcagtacctgtggtcgaccggcgatcac
gagatcaaccgctggccggccacatcgatccaagaggccgcatga
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