Capillimicrobium parvum: DSM104329_01042
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Entry
DSM104329_01042 CDS
T08390
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sbae
Capillimicrobium parvum
Pathway
sbae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM104329_01042 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbae03400
]
DSM104329_01042 (mfd)
Enzymes [BR:
sbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM104329_01042 (mfd)
DNA repair and recombination proteins [BR:
sbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM104329_01042 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UGS34662
UniProt:
A0A9E7BZM7
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All DBs
Position
1050313..1053834
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AA seq
1173 aa
AA seq
DB search
MAVAVAVAVAGPAAGRWRGRRGALVDSVQAPAAPSRGRSVCAHMALRPLLALIEDDPGGS
TLVRDGGRAFASSSLRPYVLAALADQDASKPAIVVAGDDRQARDLAADLRAWLAPRRVRF
YPSRGVAYESHLAPPPHLVGLRVAALDALLDPGTVDAPVVVVSAVALSEKVPDPELRPHS
LRLVVGDLIDVDEFTQQLADAGYERVDQVSDRGQFAVRGGILDIYPATEDRAVRVDLFDI
EIESLRWFSTFTQRSLGDAEAVEIAPAAELAPEHRELAEIAALSSEDERPGHRAPSTDEA
DERWFARGRIAELLPVDRFRAFLDLAPDDALLLVAAEEEIAPALADHWQDVCAAFHAEDA
HDLYVKPEEIQAALDARARVRLSAISGDQPIELRGQAADTGSRSLKEAESELEKLVRSGY
RTVVTWARHGEGERAAYNLARLKAGWLDGVPVYDASLHFATASLRDGFIAPSLKLAVVPE
HRLIRRRRAEPSGPAVSGKRGVLRSFADLRAGDIVVHEDHGIARFAGFDTRTVAGVTRDY
LLLEYAGEDRVFVPSDQLAKISRYVGAGGEHPPLSKLGGTRWDTIKARARRAAQELAGEL
LNLYAERKRRSGFAFDPDGDWLRDFEAKFPHTETADQREAIEVVKADMETARPMDRLICG
DVGYGKTEVALRAAFKAVEGGKQVLMLVPTTILAQQHFGTFSERLRDYPFTIEHVSRFRP
AKEQREAVARFNQGKVDILIGTHRLLSRDVRPKDLGLLIVDEEQRFGVKQKELLRQLKLR
VDVIAMSATPIPRTLQMSLAGVRDISVIETPPEGRRPVKTYVGEYDEDLVKQALEREHKR
GGQAFFLHNRVETIDETAERLRALCPGMTFAVGHGQLDADELEQRMLSFLRGDADVLVAT
SIIESGIDIPQANTLVVERADVFGLAQLYQIRGRVGRSRERAYAYLLYPSADALTQEAAQ
RLAALSDYTELGAGFKIAMRDLEIRGAGNLLGDEQSGHVAALGFELYLQMLDEAVRAAEG
MADDAPEPVRLDVNVDAYVPADYVPYEQAKIDVHRRIAGAAEVADLALLRDELEDRFGPV
PEPLSNLISLQQARIKLGQAGAQAVTFRGGRLAVTPVELDSVRAKRIREQIPGALYESGK
SQLSVRVPDDPQQRFPAVVHAADVLLSVTREAA
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtggcggtggcggtggcggtggcggggccggcggcggggcggtggcggggccgg
cgcggcgctctcgtagactcggtgcaggcaccggccgcgccctcgcgcgggcggtcggtg
tgcgcgcacatggccctcagacccctccttgcactcatcgaagacgaccccggcggctcc
acgctcgtccgcgacggcgggcgcgcgttcgcgtcgtcgtcgctgcgcccgtacgtcctc
gccgccctcgccgaccaggacgcgtcgaagcccgcgatcgtcgtcgccggcgacgaccgc
caggcccgcgacctcgccgccgacctgcgcgcctggctcgcgccgcggcgggtgcgcttc
tacccgagccgcggcgtcgcgtacgagtcgcacctcgcgccgccgccgcacctcgtgggc
ctgcgcgtcgcggcactcgacgcgctgctggatccgggcaccgtggacgcgccggtcgtc
gtcgtctccgccgtcgcgctctcggagaaggtccccgaccccgagctgcgcccgcactcg
ctgcgcctcgtggtcggcgacctgatcgacgtcgacgagttcacccagcagctcgccgac
gccggctacgagcgcgtcgaccaggtctccgaccggggccagttcgccgtccgcggcggc
atcctcgacatctatccggccaccgaggaccgcgcggtccgcgtcgacctcttcgacatc
gagatcgagtcgctgcgctggttctcgacgttcacgcagcgctcgctgggggacgccgag
gcggtcgagatcgcgccggccgccgagctcgcgcccgagcaccgagagctggcggagatc
gccgccctgtcgagcgaggacgagcggcccgggcaccgcgcgcccagcaccgacgaagct
gacgagcggtggttcgcgcgcggtcggatcgcggagttgctgcccgtcgaccgcttccgc
gcgttcctcgatctcgccccggacgacgcgctcctgctcgtcgccgccgaggaggagatc
gcgccggcgctcgccgaccactggcaggacgtctgcgccgccttccacgccgaggacgcc
cacgacctctacgtcaagcccgaggagatccaggcggcgctcgacgcgcgcgcccgggtc
cggctctccgccatctccggcgaccagccgatcgagctgcgcggccaggccgccgacacg
ggctcgcgctcgctcaaggaggccgagtccgagctcgagaagctcgtgcgctccggctac
cgcacggtcgtgacgtgggcgcgccacggcgagggcgagcgggccgcgtacaacctcgca
cggttgaaggcggggtggctggacggcgtgccggtctatgacgccagcctccatttcgcc
acggcgtcgctgcgcgacggcttcatcgcgccgtcgctcaagctcgccgtcgtccccgag
caccggctcatccgccggcgccgcgccgagccgtccggcccggcggtctccggcaagcgc
ggcgtcctgcgctcgttcgccgacctgcgcgccggcgacatcgtcgtccacgaggaccac
ggcatcgcccgcttcgccggcttcgacacgagaaccgtcgccggcgtgacccgcgactac
ctgctgctcgagtacgccggcgaggaccgcgtcttcgtgcccagcgaccagctggcgaag
atctcgcgctacgtcggcgcgggcggcgagcacccgccgctgagcaagctcggcggcacc
cggtgggacacgatcaaggcccgggcccgccgcgccgcccaggagctcgccggcgagctg
ctgaacctctacgccgagcgcaagcgccgcagcggcttcgccttcgatcccgacggcgac
tggctgcgcgacttcgaggcgaagttcccgcacaccgagaccgccgaccagcgggaggcg
atcgaggtggtcaaggccgacatggagaccgcgcggccgatggaccgcctcatctgcggc
gacgtcggctacgggaagaccgaggtggcgctgcgcgccgcgttcaaggcggtcgagggc
ggcaagcaggtcctgatgctcgtgccgacgacgatcctcgcccagcagcacttcggcacg
ttctccgaacgcctgcgcgactaccccttcacgatcgagcacgtcagccgcttccggccc
gccaaggagcagcgcgaggccgtcgcgcgcttcaaccagggcaaggtcgacatcctcatc
ggcacgcaccgcctgctgtcgcgcgacgtgcgccccaaggacctcggcctgctcatcgtc
gacgaggagcagcgcttcggcgtcaagcagaaggagctgctgcgccagctcaagctgcgc
gtcgacgtcatcgcgatgagcgcgacgccgatcccgcgcacgctgcagatgtcgctggcc
ggcgtgcgggacatctcggtcatcgagacgccccccgagggccggcggcccgtgaagacc
tacgtcggcgagtacgacgaggacctcgtcaagcaggcgctcgagcgcgagcacaagcgc
ggcggccaggcgttcttcctgcacaaccgggtcgagacgatcgacgagaccgccgagcgg
ctgcgggccctgtgcccggggatgacgttcgcggtgggccacggccagctcgacgccgac
gagctcgagcagcggatgctgtcgttcctgcgcggcgacgccgacgtcctcgtggcgacg
tcgatcatcgaatcgggcatcgacatcccgcaggcgaacacgctcgtcgtcgagcgcgcc
gacgtcttcggcctcgcccagctctaccagatccgcgggcgcgtcggccggtcccgcgag
cgggcatacgcctacctgctgtatccgagcgccgatgcgctgacgcaggaggccgcgcag
cgcctcgccgcgctcagcgactacaccgagctcggcgccggcttcaagatcgccatgcgc
gacctcgagatccggggcgccggcaacctcctcggcgacgagcagtccggccacgtcgcc
gcgctgggcttcgagctgtacctgcagatgctcgacgaggcggtgcgcgccgcggagggc
atggccgacgacgcgcccgagccggtgcgcttggacgtcaacgtcgacgcctacgtcccc
gccgactacgtcccgtacgagcaggcgaagatcgacgtgcaccggcgcatcgcgggggcg
gccgaggtcgccgacctggcgctgctgcgcgacgagctcgaggaccgcttcggacccgtc
ccggagccgctgtcgaacctgatctccctgcagcaggcgcgcatcaagctcggccaggcc
ggcgcgcaggccgtgacgttccggggcggacggctggcggtcacgccggtcgagctcgac
tccgtgcgcgcgaagcgcatccgcgagcagatccccggcgcgctgtacgagtccggcaag
tcgcagctgtccgttcgcgtccccgacgacccccagcagcgcttccccgcggtcgtccac
gcggccgacgtgcttctttcggtgactcgagaggccgcttga
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