Capillimicrobium parvum: DSM104329_02776
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Entry
DSM104329_02776 CDS
T08390
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sbae
Capillimicrobium parvum
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbae03019
]
DSM104329_02776
Enzymes [BR:
sbae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSM104329_02776
Messenger RNA biogenesis [BR:
sbae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSM104329_02776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
NACHT
T2SSE
nSTAND3
Ribosomal_L25p
SLFN-g3_helicase
ABC_tran
PhoH
TsaE
DUF2939
Motif
Other DBs
NCBI-ProteinID:
UGS36372
UniProt:
A0A9E7C1A4
LinkDB
All DBs
Position
2838833..2842678
Genome browser
AA seq
1281 aa
AA seq
DB search
MATTTSVLRDRLADLTLRDEHRLRRRLDRAQDARARERVEEEIDRAAAHAARRRDAVPAV
TYPEQLPVSARREEIAAAIAAHQVVVVAGETGSGKTTQLPKICLELGRGVRGAIAHTQPR
RLAARTVAQRIADELDVPLGDAVGYAVRFNDRSSQDTLVRLMTDGLLLAEIQRDPLLRRY
DTVIVDEAHERSLNIDFLLGYLRRILPRRPDLKLVITSATIDPGRFSRHFGDAPVVEVSG
RTYPVEVRYRPLEDPDGADRDQVDGIGDAVEELLREKPGDVLVFLSGEREIRDTADALRG
RLGDGVEILPLYARLSDAEQRRVFTAHRGRRVVLATNVAETSLTVPGIRYVVDPGTARIS
RYSARLKVQRLPIEPISQASADQRKGRCGRVAEGICIRLYAEEDFVARPRYTDPEILRTS
LAAVILQMAWVGLGDIEDFPFLDPPDRRQIRDGLNLLDELAAIEQDRRLTPLGRRLARLP
VDPRLGRMVLEADRLGCAEEVIVIAAALSIQDPRERPAEQQEAADAQHRRFADETSDFLS
YLKLWHHLRGGRRELSGNQFRKRCKAEFLHHLRIREWQDLAGQLRGAAREAGVTLNEQPA
EPREIHAALLAGLLSHVGVRDEGRREYLGARGARFAIFPGSALARKPPAWVMVAELVETS
RLWGRVAARIEPESIEPLAAHLVKRTYSEPHWERRRGSVVATERVTLYGLPIVTGRKVAY
GKIDPVLARDLFIRRALVEGDWDTRHRFFHANRELLEEVEELEHRTRRRDLLVDDATLHD
FYEQRIPADVVSAAHFDRWWRDAREADPDLLTFSRQLVIDERAAADLDPQGWPPAWRQGD
VTLPLTYRFEPGADDDGVTAHVPLAALAQLRPIGFDWLVPALREELVTALLRTLPKDLRR
PLVPVPETAAAVLAALEPRRRPLLDSLATALEQLRGVRAAPSDFDPGRLPDHLRMRFAIE
EPDGRAVAAGRDLEALRARVRPRLRADLAARTAGLERTGLRAWTIGTLPRTVELPGTGGA
VVAYPALADEGETVGVRVLDTPAAQAAAMRAGTRRLLELTVPSPVRWVRGRLSSAAQLAL
ATAPHGSVAAVLEDATVAAIDALTAEAGGPAWDDAGFARLRDHVAGHLAERTAQVVDGVV
AVLDAEREVRRAMEPLMAPPVEPARRDVEAQVRRLVPPGFIAEAGVARLGDVERYLRAAA
HRLERLPNNPAADLDRMRAINALEEAYRQRITTWPQGRPLPDALREVPWLLQELRVAQFA
QGFGARGQVSAKRIRRILDEA
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
gtggccacgacgacctccgtgctgcgcgaccgcctggcggacctgaccctgcgcgacgag
catcgcctgcgccgccggctcgaccgcgcgcaggatgcccgggcccgcgagcgggtggag
gaggagatcgaccgggccgccgcgcacgccgcccgccgccgcgacgccgtccccgcggtc
acgtacccggagcagctgccggtcagcgcccgccgcgaggagatcgccgccgccatcgcc
gcccaccaggtcgttgtcgtcgcgggcgagaccggcagcggcaagacgacgcagctgccg
aagatctgcctggagctcggccgcggcgtgcgcggcgcgatcgcccacacgcagccgcgc
cgcctggccgcgcgcactgtcgcgcagcgcatcgccgacgagctggacgtcccgctcggc
gacgccgtcggctacgcggtgcgcttcaacgaccgctcgagccaggacacgctcgtgcgc
ctgatgaccgacggcctgctgctcgccgagatccagcgcgacccgctgctgcgccgctac
gacaccgtcatcgtcgacgaggcgcacgagcgcagcctgaacatcgacttcctcctcggt
tacctccggcgcatcctgccgcgccggccggacctgaagctcgtcatcacgtcggcgacc
atcgacccggggcgcttcagccgccacttcggcgacgcgccggtggtcgaggtctcgggc
cggacgtatccggtcgaggtgcgctaccgcccgctcgaggaccccgacggcgccgatcgc
gaccaggtcgacggcatcggcgacgccgtggaggagctgctgcgcgagaagcccggcgac
gtgctcgtcttcctgtccggggagcgcgagatccgcgacaccgccgacgcgctgcgcggc
cgcctcggcgacggcgtcgagatcctcccgctgtacgcgcggctgtcggacgccgagcag
cgccgcgtgttcaccgcgcaccggggccggcgcgtggtgctcgccacgaacgtcgccgag
acctcgctcaccgtgcccggcatccgctacgtcgtggacccgggcaccgcgcgcatcagc
cgctacagcgcccgcctgaaggtccagcgcctcccgatcgagccgatctcgcaggcctcc
gccgaccagcgcaagggccgctgcggccgcgtcgccgagggcatctgcatccgcctctac
gccgaggaggacttcgtggcgcgcccgcgctacaccgaccccgagatcctgcgcacgagc
ctcgccgcggtgatcctgcagatggcctgggtcgggctgggcgacatcgaggacttcccg
ttcctcgatccgccggaccgccgtcagatccgcgacgggctgaacctcctcgacgagctg
gcggcgatcgagcaggaccggcggctgaccccgctcggccgccggctcgcccgcctcccg
gtcgatccgcggctggggcgcatggtgctcgaggccgaccgcctgggctgcgccgaggag
gtcatcgtcatcgccgccgcgctgtcgatccaggacccgcgcgagcgcccggccgagcag
caggaggccgccgacgctcagcaccgccgcttcgccgacgagacctcggacttcctcagc
tacctgaagctgtggcaccacctgcgcggcggccggcgcgagctgtcgggcaaccagttc
cgcaagcgctgcaaggccgagttcctgcaccaccttcgcatccgcgagtggcaggacctc
gccggccagttgcgcggcgcggcgcgggaggcgggcgtcacgctcaacgagcagccggcc
gagccgcgcgagatccacgcggcgctgctggcgggcctgctgtcgcacgtcggcgtgcgc
gacgagggccggcgcgagtacctgggcgcgcgcggcgcgcgcttcgccatcttccccggc
tcggcgctcgccaggaagccgccggcctgggtcatggtcgccgagctcgtggagacgtcg
cggctgtgggggcgggtcgccgcgcggatcgagcccgagtcgatcgagccgctcgccgcg
cacctcgtcaagcgcacgtacagcgagccgcactgggagcgccgccggggctcggtcgtc
gccacggagcgcgtgacgctctacgggctgccgatcgtcaccggccgcaaggtcgcctac
gggaagatcgacccggtcctcgcgcgcgacctcttcatccgccgcgcgctcgtcgagggc
gactgggacacgcgccaccgcttcttccacgccaaccgtgagctgctcgaggaggtcgag
gagctcgagcaccgcacgcgccggcgcgacctgctcgtcgacgacgccacgctgcacgac
ttctacgagcagcggatcccggccgacgtcgtgtcggccgcgcacttcgaccgctggtgg
cgcgacgcgcgcgaggccgatccggacctgctgacgttcagccggcagctcgtgatcgac
gagcgcgccgcggccgatctggacccgcagggctggccgccggcctggcgccagggcgac
gtgaccctgccgctgacctaccggttcgagccaggggcggatgacgacggcgtcaccgca
cacgtcccgctcgccgcgctcgcgcagctgcggccgatcgggttcgactggctcgtgccg
gcgctgcgtgaggagctcgtcacggcgctgctgcgcacgctgccgaaggacctgcggcgc
ccgctcgtcccggttcccgagaccgccgcggcggtcctggccgcgctggagccgcgccgc
cggccgctgctggactcgctcgccaccgcgctcgagcagctgaggggcgtgcgcgccgcg
ccatcggacttcgaccccggccgcctgcccgaccacctgcgcatgcgcttcgcgatcgag
gagcccgacggccgcgccgtcgccgccggccgcgacctcgaggccctgcgcgcgcgggtg
cgcccgcggctgcgcgccgacctcgcggcgcgcacggccgggctggagcgcaccgggctg
cgcgcgtggacgatcggcaccctgccgcggaccgtcgagctgcccggcacggggggcgcg
gtcgtcgcctatcccgcgctcgccgacgagggcgagaccgtcggcgtgcgggtcctcgac
acgccggccgcgcaggcggcggccatgcgcgcggggacgcgcaggctcctggagctcacg
gtgccgtcgccggtgagatgggtgcgcgggcggttgtcgagtgccgcgcagctggcgctc
gcgaccgcgccccacggcagcgtcgcggcggtgctcgaggacgcgaccgtcgcggcgatc
gacgcgctgaccgccgaggcgggcggtccggcctgggacgacgccgggttcgcgcggctg
cgcgaccacgtggccggccacctcgccgagcgcaccgcgcaggtggtcgacggggtggtg
gcggtgctcgacgccgagcgcgaggtgcgccgggccatggagccgctcatggcgcccccg
gtcgagccggcgcggcgcgacgtcgaggcgcaggtgcgccggctcgtcccgccggggttc
atcgcggaggcgggcgtcgcccggctcggcgacgtcgagcgctatctgcgggcggccgcg
caccggctcgagcggctcccgaacaacccggcggccgacctcgaccggatgcgcgcgatc
aacgcgctcgaggaggcctaccggcagcggatcacgacatggccgcagggccgcccgctg
cccgacgcgctgcgggaggtgccgtggctgctgcaggagctgcgcgtcgcgcagttcgcc
cagggcttcggcgcgcggggccaggtgtcggcgaagcggatccggcggatcctcgacgag
gcctga
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