Capillimicrobium parvum: DSM104329_03142
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Entry
DSM104329_03142 CDS
T08390
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sbae
Capillimicrobium parvum
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbae03016
]
DSM104329_03142 (truB)
Enzymes [BR:
sbae01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DSM104329_03142 (truB)
Transfer RNA biogenesis [BR:
sbae03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DSM104329_03142 (truB)
Prokaryotic type
DSM104329_03142 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
WDR90_beta-prop_4th
Motif
Other DBs
NCBI-ProteinID:
UGS36733
UniProt:
A0A9E7C1S5
LinkDB
All DBs
Position
complement(3213072..3213869)
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AA seq
265 aa
AA seq
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MLIDKPAGKTSHDIVAAARRRFGRGVRVGHAGTLDPFATGLLIVLAGRATRAQRFFMGQP
KAYETVARLGWTSTTGDPEGEVEHTGRLPDLDRPLPTGRLRQRPPAYSAVKVGGRRAYEL
ARAGTEVELAEREVEVTRFELLGRDGDRATFAIECSTGTYVRSLIGDLGDAYCLQLRRTA
IGPFRIEDADPERVVPLGDALAAILPVVAVDGEAARRAAHGVALTAPSGAPQGPVVVLAD
GDGPIAVAEPREGGVLKPIVGFRPG
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcgacaagcccgcgggcaagacgtcgcacgacatcgtcgcggccgcccggcgc
cgcttcggccgcggcgtacgggtgggccacgccgggacgctggaccccttcgccacgggc
ctgctgatcgtgctcgccggtcgcgccacgcgggcgcagcggttcttcatgggccagccg
aaggcctatgagacggtcgcccggctggggtggacgtcgacgaccggggaccccgagggc
gaggtcgagcacaccggccgcctcccggacctcgaccgcccgctgcccaccgggcggctg
cgccagcgcccgccggcctactccgccgtcaaggtcggcggccggcgcgcctacgagctc
gcccgcgccggcaccgaggtcgagttggccgagcgcgaggtcgaggtcacccgcttcgag
ctgctgggacgcgacggcgaccgcgcgacgttcgcgatcgagtgctcgaccggcacctac
gtgcgctcgctgatcggcgacctcggcgacgcgtactgccttcagctgcggcgcacggcg
atcgggcccttccggatcgaggacgccgaccccgagcgggtcgtgcccctcggcgacgcg
cttgcggcgatcctgccggtcgtcgcggtggacggtgaggccgcgcgccgggcggcccac
ggcgtggccctgacggcgccctccggggccccgcagggcccggtcgtggtgctcgccgac
ggcgacggcccgatcgcggtcgccgaacctcgggagggcggtgttctgaagcccatcgta
ggcttccggcccggatga
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