Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17: UW38_C0001G0228
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Entry
UW38_C0001G0228 CDS
T04605
Symbol
rpoC
Name
(GenBank) RNA polymerase (beta' subunit)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sbag
Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
Pathway
sbag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sbag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UW38_C0001G0228 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbag03021
]
UW38_C0001G0228 (rpoC)
03400 DNA repair and recombination proteins [BR:
sbag03400
]
UW38_C0001G0228 (rpoC)
Enzymes [BR:
sbag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UW38_C0001G0228 (rpoC)
Transcription machinery [BR:
sbag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UW38_C0001G0228 (rpoC)
DNA repair and recombination proteins [BR:
sbag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UW38_C0001G0228 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AKM80093
UniProt:
A0A0G4AY38
LinkDB
All DBs
Position
complement(181268..185101)
Genome browser
AA seq
1277 aa
AA seq
DB search
MSRVVAGTGIADFDAVRLAVASPEDMLKWSHGEVTKPETINYRTQKPERDGLFCERIFGP
VKDINPHDSKLKGVRSREAAIDKNGELVTKSIVRRERMGHINLAAPVAHIWFMRGTPSAM
SLLLGITVRNIERVAYFASYIILDVETEKRDQFLADLEAETEAGRMAIKIRYEKEAEAEG
ADVKALAAAQSREVEELNESFNTKKAQLDSLVKGALLNETDYRNLPEEYEELATVGMGGT
AIKAMLDAIDLPTLIKQLGEEVEGAKGQREKKLLKRLKVLEGMQAAGIRPNSLCLTVLPV
IPPDLRPMVQLTGGRFATSDLNDLYRRVINRNNRLKKLIDLNAPEVIRRNEMRMLQEAVD
ALVDNSAARGGRAVNATGGRRRLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPKL
KISECGLPKQMALELFKPFVISWLIRGEHAHNIRSATRLIESGDTLVWDALDAVIEGKYV
LLNRAPSLHRLSIQAFQPVLVEGKAIQLHPLVANGFNADYDGDQMAVHLPLSDDAQREAR
ELMSATNNLLKPADGAPVLNIGQDVVLGNYYLTYEKPSAQTKETKAYSSVYEAEMAYDQG
VLQLQTPIRVFAKGEIRDTTLGRVFFNEILPADYPYDNSVQNKKQLKKVLAKIFNQYDAE
ETAKIADRMKGLAFRFATIAAVSTGKDDYLNFDEIGEFVSEGDEKTALISDQFDQGLITE
DERYNLTVQSWRGVDRKVTEFLQDQLKNMDTSISVMVNSGARGDISNVKLASAMVGIMVD
AANREIELPIRSSYKAGLSSLESFVATRGARKGLIDTALKTADSGYLTRRLVDVSQDVFT
VEDEEGDDEGFAIRRAETEETMIDFKNRLYGRFTAEDVGSHIKKDELITMSVAEAIEADS
SIDEVKIQSVLSTKNLRGIPKKSYGIDMSTGSLVANAQPVGVIAAQSVGEPGTQLTLRTF
HAGGVAGGDITQGLPRVEELFEARSPKGQAFVTEVTGTVDIWEDGKKYIVQVTPEAGHVE
RIALEGRTINVKSGSNVKVGDVLASSEGEARPLVAPFDGVVEVAEDTLVLAANAGAPVRY
EIPGNTQLVVRANDQVEAGDRLTIGSLNLHDLMRLKGTEATQRYIINEVLRIYAAQGQDV
ADKHLEIIVRQMFSRVQVEDPGESTFVTGDIVSKAAVVDANAELAARGQELVQYTQLLLG
ITKVSIWSDSWLSAASFQDTTRVLISAATSGRADRLHGLKENVIIGRKIPVGTGAIVNTP
EEVITEVEVEEILDIAE
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgagttgttgcaggcaccggtattgctgactttgacgctgtacgtctcgccgta
gcaagtccagaggacatgcttaagtggagtcacggtgaagtcactaagccagaaacaatc
aactatcgtactcaaaagcctgagcgtgatggacttttctgtgaacgaatcttcggacca
gtgaaagatattaatccacacgacagtaagcttaagggcgtccgctctcgtgaagcagcg
atcgataagaacggtgagcttgtcactaagtctatcgtccgtcgtgagcgaatgggacac
atcaacctcgctgctccagttgcacacatctggtttatgcgcggtacgccaagtgcgatg
agcttgcttcttggtattacggttcgaaatatcgagcgcgtagcatactttgcaagctat
atcatccttgatgtagagactgaaaagcgcgatcaattcctcgctgatctagaagcagag
actgaagctggtcgcatggcgatcaagatccgctacgaaaaagaagctgaagctgaaggt
gctgacgtaaaagcacttgctgcagctcaatcacgagaagttgaagagctcaatgagagt
ttcaacacaaagaaagcgcagcttgatagtctcgtaaagggtgcacttcttaacgaaact
gactaccgcaatcttcctgaagagtacgaagagctcgcaactgttggtatgggtggtacg
gcaatcaaagctatgcttgatgcaatcgaccttccaacactcatcaagcagcttggtgaa
gaagtcgaaggtgctaagggtcagcgcgagaagaagctgctcaaacgccttaaggtactt
gagggtatgcaagcagcgggcatccgtccaaacagcctatgtcttactgttcttcctgtg
attccaccggatcttcgtccaatggtacagcttacaggtggccgttttgcgacatctgat
cttaacgacctttatcgtcgtgtgatcaaccgtaataatcgccttaagaagcttatcgac
ctcaatgcccctgaagtaatccgtcgcaatgagatgcgtatgcttcaagaagctgttgat
gcacttgttgacaactctgcagcccgtggtggtcgtgcagttaacgcaactggtggccgc
cgtcgcctgaagtcaatctctgatatgctcaagggtaagcagggacgtttccgtcagaac
cttctcggtaaacgtgtcgactactcaggacgttcagtgattgttgtcggtccaaagcta
aagatttctgaatgtggtctaccaaagcaaatggcacttgagctattcaagccattcgtc
attagctggcttatccgtggtgagcatgctcacaacatccgttctgcaactcgacttatc
gagtcgggcgacacactggtatgggacgcactcgacgcagtgattgaaggtaagtacgtt
cttcttaaccgtgcgccgtcacttcaccgtctttcaattcaggcattccagccggtactt
gttgaaggtaaggcgatccaacttcacccactcgtagcaaacggatttaacgccgactac
gatggtgaccagatggctgttcacttgccactttctgacgacgcgcagcgtgaagctcgc
gaactcatgagtgcaacaaacaaccttcttaaacctgccgatggtgctccggtactcaat
atcggccaggacgttgtccttggtaattactaccttacctacgaaaagccaagtgctcag
actaaagagacgaaagcatatagctcagtctacgaagctgagatggcatatgaccagggt
gtactgcagcttcagacaccaattcgtgtatttgcgaagggtgaaatccgcgatacaaca
cttggacgcgtcttcttcaacgagattcttcctgcagactatccgtacgacaatagcgta
cagaacaagaagcagcttaagaaagttcttgcgaagattttcaaccagtatgatgcagag
gaaacagcaaagatcgctgaccgcatgaagggtcttgccttccgatttgcgacaatcgcc
gctgtatcgacaggtaaagacgactaccttaactttgacgaaattggtgaatttgtctct
gaaggtgacgagaagacagcgttgatctctgatcaattcgaccaaggtctcatcacagaa
gacgaacggtacaacttgaccgtccagtcatggcgtggcgttgaccgtaaggtaacagag
ttcttgcaagatcaactcaagaacatggatacaagcattagtgtcatggtgaactcaggt
gcccgtggtgatatctcaaacgtgaagcttgcttctgcgatggtaggaatcatggtggat
gcagcaaaccgtgagattgagcttcctattcgttcaagctataaagcagggctttcatca
ctcgaatcattcgtggcgacacgtggtgcacgtaagggtctgatcgataccgctcttaag
actgccgactcaggctacctgactcgtcgtcttgtcgatgtatctcaggatgtctttacg
gttgaagacgaagaaggtgatgatgaaggattcgctattcgccgtgctgaaactgaagag
acaatgatcgacttcaagaaccgtctttacggacgattcacagctgaagatgtgggatca
catatcaagaaggatgagctcattacgatgagtgtagctgaagcaattgaagctgatagc
tcaattgatgaagtaaagatccaatctgtactctctacaaagaaccttcgtggtattcca
aagaagagctacggtatcgatatgtcaactggtagtcttgttgcaaatgcacagccggtt
ggtgttatcgccgcacagtctgtcggtgagcctggtacacagctaacgcttcgaaccttc
cacgccggtggtgttgctggtggagacatcacacagggtctccctcgtgttgaagagctc
tttgaagcccgttcaccaaagggtcaggcgtttgtcactgaagtaactggtacggttgat
atttgggaagatggcaagaagtacatcgtccaggtaacacctgaagctggccatgttgag
cgaattgctcttgaaggccgtacgatcaacgtgaagtcaggaagtaatgtaaaggttggt
gacgttcttgcatcaagcgaaggtgaagctcgaccgctcgttgcgccatttgatggtgtc
gtagaggttgctgaagacacattggtacttgctgcaaacgcaggcgcaccagtacgttac
gagattccaggcaacacgcaacttgttgttcgagcgaatgatcaggttgaggcgggtgat
cgtctcactatcggatcactgaacttgcatgatctcatgcgacttaagggtactgaggcg
actcaacgttacatcattaacgaagtactgcgcatctatgcggcacagggtcaagatgtt
gctgacaagcaccttgagatcattgtgcgacagatgttcagtcgtgttcaggtggaagat
ccaggcgagagcacgtttgtaactggcgatatcgtatcaaaagctgcagtcgtcgatgca
aacgcagaactcgcggcacgcggccaagaacttgtgcagtatacgcagctactcctcggt
atcacgaaggtatcgatctggagcgatagttggctttctgcagcgtcattccaagatacg
actcgtgtcttgattagcgcagcaacaagtggacgcgctgaccgtcttcacggactcaag
gagaatgttatcatcggacgtaagatccctgtgggaactggtgcgattgttaatactcct
gaggaagttattacggaagttgaagtcgaagagatcctcgacatcgcagagtag
DBGET
integrated database retrieval system
