Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17: UW38_C0001G0858
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Entry
UW38_C0001G0858 CDS
T04605
Name
(GenBank) putative polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sbag
Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
Pathway
sbag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UW38_C0001G0858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbag03019
]
UW38_C0001G0858
03016 Transfer RNA biogenesis [BR:
sbag03016
]
UW38_C0001G0858
Enzymes [BR:
sbag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UW38_C0001G0858
Messenger RNA biogenesis [BR:
sbag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UW38_C0001G0858
Transfer RNA biogenesis [BR:
sbag03016
]
Prokaryotic type
tRNA degradation factors
UW38_C0001G0858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
PNPase
BPL_C
Motif
Other DBs
NCBI-ProteinID:
AKM80697
LinkDB
All DBs
Position
777417..779531
Genome browser
AA seq
704 aa
AA seq
DB search
MSTINPMGKDIISVSTELAGRTLTLEVNRLGFRTTASVLVRYGDTVVLGTAMVGSRPVVL
DYFPLSIDYEEKFYAAGKISGSRFIKREGRPSDEAVLIGRLIDRPIRPLFPKGYRQEVQV
VASVLSMDPNFRPDMVAMIAASAALSLTGTPFDGPVAGLRIGRVNGEFKAFLTAEEREES
DLDLVVAGIESGITMVEAGANEVSEEAIADALAWAYEQYQPAIALQKELVEKIAPVAQEY
ALVLPNEEIQQAVNEWVDGKLGEALHHPYPERNELVSTLRWAFHDEMREKFGEDEYKALH
DEYDEAFTSALHYDVRKGIINLQTRPDGRKLDEIRPLSSEVSLLPRAHGSSLFTRGVTQG
LNIVTLAPLSFAQMVDTMEQNDYERRYMHHYNAPGYTVGEVRRLGGAGRREIGHGYLAER
AVLPVLPSAEEFPYAIRSVTEIMSQNGSTSMAATCSSVLALMDAGVPLKRPVSGIAMGLM
MDNGTPYVLSDIADAEDFAGDMDFKVTGTSEGITAIQMDMKVHGLPVEILRQALEKSKAG
RAHILEHMVTTLAEPRAELSPYAPRIEKIKINPDKIGAVIGKGGEVINKITAETGAMIDI
KEDGLITVAGQDAAGIQRAINWIKGLTEEPEVGRVYDGKVVSIKDFGAFINILPGIDGMV
HISELSDERVERVEDILTEGEIVKVKLVGIDERGRLSLSIKDVE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaatcaacccaatgggtaaggatattattagtgttagcacggaacttgctggc
agaacattaacacttgaggtaaaccgacttggttttcgtacgacggcgagcgtgcttgta
cgttatggtgacacggtagtacttggtacggctatggttggatcacgaccggttgtactc
gactatttcccactctcaatcgattatgaagaaaagttttatgcagcaggcaagattagc
ggtagtcgtttcattaagcgagaaggtcgtcctagtgacgaagctgtgcttattggtcgt
cttatcgatcgtcctattcgtccactctttccaaaaggctatcgtcaggaagttcaggta
gttgcaagcgtcctctcgatggatccaaatttccgtcccgatatggtagcaatgatcgca
gcgagcgcagcactgagtcttacgggtacgccgtttgatggtcctgttgcagggcttcgt
atcggtcgcgtaaacggtgaatttaaggcatttcttacagctgaagaacgtgaagagagc
gaccttgatcttgttgtcgcgggtatcgaaagcggtatcacgatggttgaggcgggtgca
aacgaagtttctgaagaagcaatcgccgacgcacttgcatgggcatacgagcagtatcaa
ccagcaattgccctccaaaaagagctcgtggaaaagatcgcaccagttgcccaggaatac
gcacttgttttgccaaatgaagagattcagcaagcagtcaatgagtgggttgatggcaag
cttggtgaggcactccaccatccatatccagaacgaaatgagcttgtcagcacacttcgc
tgggcgttccacgatgagatgcgtgagaaattcggtgaagatgagtataaggcgcttcat
gatgaatatgacgaagcatttactagtgcactacactacgacgtaagaaaaggcattatc
aatctccagacacgcccagacggccgtaagcttgatgagattcgaccactttcaagtgaa
gtgtcacttctacctcgtgctcacggttcaagcctgtttactcgcggtgttacgcagggt
cttaatatcgtgacgcttgcaccattaagctttgcgcagatggttgatacgatggagcaa
aacgactacgaacgtcgctacatgcaccactacaatgcacctggctatacggttggtgaa
gtacgtcgacttggtggtgctggacgtcgcgagattggccacggatacctcgcagaacga
gcggtacttccggtacttccatcggcagaagaattcccgtatgcgattcgtagcgttacg
gaaattatgagccagaatggttcgacctctatggcggcaacatgtagctccgtgctagca
cttatggatgcaggcgtgccactcaaacgtccggtttctggtattgcgatgggacttatg
atggataacggtactccgtatgtcctgagtgacattgccgatgctgaggattttgctggt
gatatggacttcaaggtaactggtacgagcgaaggaattacggcaattcagatggatatg
aaggtgcatggtctaccggttgaaatcttacgtcaagcacttgagaagtcgaaagctggg
cgagcgcatatccttgagcatatggtaacaacgcttgctgagccccgtgctgagctgagc
ccatacgcaccacgtatcgagaagatcaagatcaatccagataagatcggtgcggtgata
ggcaagggcggagaagtgatcaataagattaccgctgaaaccggcgcgatgattgatatc
aaagaggacggacttatcactgtcgctggtcaagatgcggctggtattcagcgagcaatc
aattggatcaaggggctaactgaagagccagaagtgggccgtgtctacgacggtaaagtc
gtgagtatcaaagactttggtgcatttatcaatatccttccgggtatcgatggtatggtg
catatcagcgagttatctgacgagcgtgtggagcgagttgaagatatcttaactgaaggt
gagatcgtcaaggtgaagctagtcggtatcgacgagcgtggacgattgagtctgtcgatc
aaagacgtcgaatag
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