Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17: UW38_C0001G1009
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Entry
UW38_C0001G1009 CDS
T04605
Name
(GenBank) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
sbag
Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
Brite
KEGG Orthology (KO) [BR:
sbag00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UW38_C0001G1009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbag03041
]
UW38_C0001G1009
Enzymes [BR:
sbag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UW38_C0001G1009
Spliceosome [BR:
sbag03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
UW38_C0001G1009
Complex C
U4/U6.U5 tri-SnRNP related factors
UW38_C0001G1009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
HA2_N
ResIII
Cas3-like_C_2
ThiI_fer
Helicase_RecD
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AKM80839
UniProt:
A0A0G4AZ00
LinkDB
All DBs
Position
921792..924122
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AA seq
776 aa
AA seq
DB search
MTVASQLGFSDTLPVFDFYDTIVDAVDQNQVTIITAETGAGKSTQVPQYLAEHGYSKVIV
TQPRILAARNLSRRVREEYAIRTGKDGDDRIGYRTAHERDDSPRTQILYCTDGLQLVREI
TGAGTEEQQVLVLDEVHEWNENMEVLVAWAKKRCEEEPRFKVVVMSATIETSTLAEYFDT
TAVVNVPGRSYEVKKRRGTDVLSEIFNQLEATTKSNMLVFLPGKSEIQNVGEAIKTKADE
AGVPVIPLHSQLEATAQQEVFANYPNGKIILATNIAQTSVTIDDVDVVIDSGLERRSEVR
NGVEGLFIAQISQADCLQRAGRAGRTKAGEYILAPYDSMPCLEFDDRPEYATPEIMRKHI
DRLTLRLANVGIDIEMLDFYHDPSKKAIQRAKRTLVALGAMTKKGDVTRIGRQMEQFPVE
SSYGRMLVEAQKYSKEVQTKLAAIIGIQEIGGIVKGGTRYTGWRKYTKQYKSDLLAQYDV
YLALPLMIAAEYEETGIISKNVHKAKEVMERLDRDLGLDPELLTPIAEDEQDPLLRCIVA
GQIDQLWMINEKGEAEHIVTKQKRELSSGTVVRNPKLVTGTPFDLQVPTRSGDLETLHLV
QGVTAVNTDWLLELAPELFMSRRGKVQYDPRSGKLTTRQMVRFGGQVLEGSGTSVNENTP
ENRRLFIDAFATWAYEQLERERRSFAKYHTKRIPPVPLRQLQQQVKSIAHNAISLDDVAS
NQKAELIALAKLHTHLGNDFMAQLGATHKRHDHRDQSRQRGWQPKHKRKFDRRRDR
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgcatcacagcttggcttttccgacacacttcctgtatttgatttttatgac
acgattgtcgacgccgttgaccaaaatcaagtgacgattattactgcagagacaggtgct
ggaaaaagcacgcaggtgccacaatatttggctgaacacggttatagtaaggtgattgtg
acgcagccaaggattcttgctgccagaaacctatcccgacgagtaagggaagaatacgct
attcgaactggcaaggatggcgatgatcgtataggctaccggacagcacatgaacgtgac
gatagtccgcgaacacaaatattatactgcactgatgggctgcagcttgttcgcgagatt
actggagctggcaccgaggagcaacaggtgcttgtactcgatgaggtgcatgaatggaac
gagaatatggaagttcttgtggcgtgggcaaagaagcgctgcgaagaagagcctcgtttt
aaggtggttgtgatgagtgcgacgatcgaaacgagtactcttgctgaatattttgacact
accgcagtagtgaatgtacctgggcgaagttatgaagtaaagaagcggcgcggtacagac
gtacttagtgagatttttaatcaactcgaggctacgacaaagagtaatatgctagtgttt
cttcctggtaagtcggagatccaaaatgttggtgaagcaatcaagacaaaggcagacgag
gctggcgtccctgttataccactgcatagccagcttgaggcgactgctcagcaagaggta
tttgcgaactatccgaacggtaaaattatattggcgacaaatattgctcagacgagcgtg
acgattgatgacgtcgatgtggtgatagatagcggcttggagcgtcgtagcgaagtgcga
aatggcgttgaggggctttttatcgctcagatttctcaggcagattgcttacaacgggct
gggcgagcagggcgcacgaaggcgggtgaatatatacttgcaccgtacgatagtatgcca
tgccttgagtttgacgaccggccggagtatgccacaccagagatcatgcgaaaacatatc
gatcgcctcacgcttcggcttgcgaacgtaggtatcgatattgaaatgcttgatttttat
catgatccaagtaaaaaagcgatccaacgcgctaagcgaacgctcgtcgcacttggtgcg
atgacgaaaaagggtgatgtcacaaggattggccgacaaatggagcaatttccagtcgag
tcgagttacggacgcatgcttgtcgaggcacaaaaatatagcaaggaagtgcagactaaa
cttgcagcaattatcggaatacaagaaatcggtggcatcgtaaagggcggcacgcgatat
acggggtggcgtaagtatacgaaacaatataagtccgacctgctcgctcagtatgatgtt
tatttggcgctgccgctcatgattgcagctgagtacgaagaaacaggtattatcagtaag
aacgtacataaagcaaaagaggtgatggagcgtctcgatcgtgacttagggcttgatcct
gagcttttgacaccaattgcggaggatgagcaggatccattgttgcgctgtattgtcgcg
ggtcagattgatcagttatggatgatcaatgaaaaaggtgaagccgagcacattgtaacg
aaacaaaagcgcgagctatcgagtggtacggtcgtgcggaatccgaagcttgtgactggc
acgccatttgacctacaggtaccaacacgtagtggtgatctcgaaacgctccatttggtt
cagggggtaacggcagtgaacactgactggctcttggagctggcgccggaattatttatg
tcgcgtcgcggtaaagtacagtacgatccgcgatcaggaaagctgacgacccggcagatg
gtacgcttcggtgggcaagttctcgaagggagcggtacgtctgtcaacgagaacactccg
gaaaatcgacgtctttttatcgatgcttttgctacatgggcgtacgaacagcttgagcga
gagcgtcgtagctttgcgaagtaccataccaaacgtattccgccagtaccactccgacag
ttgcagcagcaagtaaagtctattgctcacaatgcgatttctcttgatgatgtcgcctcg
aaccaaaaagcagagctcattgcgctcgcaaagctacatactcatttaggcaatgacttc
atggcgcagctgggagctacacacaaacgtcacgatcatcgtgatcaatctcgtcagcgt
ggctggcagcccaaacataagcgaaagtttgatcgacgacgcgatagataa
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