Candidatus Sulfurimonas baltica: HUE88_02295
Help
Entry
HUE88_02295 CDS
T07552
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sbal
Candidatus Sulfurimonas baltica
Pathway
sbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE88_02295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbal03019
]
HUE88_02295
03016 Transfer RNA biogenesis [BR:
sbal03016
]
HUE88_02295
Enzymes [BR:
sbal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HUE88_02295
Messenger RNA biogenesis [BR:
sbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HUE88_02295
Transfer RNA biogenesis [BR:
sbal03016
]
Prokaryotic type
tRNA degradation factors
HUE88_02295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_2nd
OB_RNR_1st
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QOY52542
UniProt:
A0A7S7RMR5
LinkDB
All DBs
Position
complement(455840..457780)
Genome browser
AA seq
646 aa
AA seq
DB search
MKSLLIRLTHGLSEQDISKDELSYVNDFLDKQYITEKEGVYKFNSKYRAGTLGLVQSSTA
YLNVIGENVKDLFIEDGDFAKAKEGDLVIAQRLLGKRGAPSAKIVEIVGRAQTYSVAYIT
SKDGAKSLADLKTGFPTGVEMTPKELNSYSDGDVFKVNNQDYTIMEKLGNMKDPLVDEKI
VLAQFNKHDEFEPEVLEVATSFKEVDASKYPKRVDLRKLPFCTIDPVTAKDFDDAIYWDD
NNTTLYVAIADVSEYVTPFGPIDNEAIYRSFSIYLPHRSIPMLPRQLSETLCSLQAHVDR
LAYVFEMKLDLNSLEVVKSKVYEAIIHSDRRFNYEEIDAYFNNELKAKNSDEVKIFDYIT
KLRVVTDKLKEKRLKIGYDFRSMELEMQIDENSNLISTTYAEETPSHALIEDCMLLANKA
AASQFARGIFRIHEPPNQVKIQKLYQELAGIGMFIDIKETIKETITDIQKQAREMDLESE
VDTLIIRSQMQARYAPMNSGHFGLGFEAYTHFTSPIRRYSDLIVHRLLKAINNNDTAEGS
YVLRNIESLSMTISEKEREASTIEVEFMARKFARWAEQNINKEFKARISSTDPEVKAELH
DEIKGAKLNITSSENATLFEDVTVCIDKVDIAKAKIFARVVQKDID
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcacttcttataagactcactcatggtttgagtgagcaggacatctctaaagat
gaactttcatatgtgaacgattttttggataaacaatatattaccgaaaaagagggtgta
tacaaatttaattccaagtaccgtgcaggtactttagggctagttcaaagttcaaccgcc
tacctaaatgttatcggtgaaaatgttaaagatctttttattgaagatggcgactttgct
aaagcaaaagagggtgaccttgttatagcacaaagattgcttggtaaaagaggtgctcca
agtgccaaaatagtcgaaatagtaggtcgtgcacaaacttacagcgttgcttatatcacc
tccaaggatggtgcgaaatctttagcagacctcaagacaggttttccgactggtgtagag
atgactccaaaagagctaaactcatacagcgacggtgatgtatttaaagtgaacaaccaa
gactacacaataatggaaaaacttggaaacatgaaagaccctcttgttgatgaaaaaata
gttcttgcacaatttaataaacatgatgaatttgagcctgaagttttagaggttgccaca
tcttttaaagaggtagatgcttcaaaatatccaaaaagagttgatttaagaaagctccct
ttttgcacaatagatcctgttacagcaaaagattttgatgatgcaatatactgggatgat
aacaacacaactttgtatgttgccattgccgatgttagtgaatatgtaacgccatttggt
ccgatagacaatgaagcaatttacagaagtttctccatctatcttcctcaccgctcgata
ccaatgcttccccgccaacttagtgaaactctatgttctctgcaggcacatgtagacaga
ctggcttatgtttttgagatgaagctagatcttaatagtctagaagtagtgaaatcaaag
gtttatgaggcaataatacactcagacagaagatttaactatgaagagattgatgcatat
tttaataatgaattaaaagctaaaaattctgatgaagtgaaaatttttgattatattact
aaacttagagttgttacagacaagcttaaagaaaaaagactgaaaatcggctatgacttc
cgctcaatggagttggagatgcaaattgatgaaaattcaaatttaatctcaactacttat
gccgaggagacaccttctcatgcacttatagaagattgtatgcttttagcaaacaaagca
gctgcttcacagtttgcaagagggatttttagaatacatgagcctccaaatcaggtaaag
attcaaaaactataccaagagttagccggaataggaatgtttatagatataaaagagact
ataaaagagacaattacagatattcaaaagcaagccagagagatggatttagagagcgag
gtagacactcttattatccgttctcaaatgcaagctagatatgctccgatgaactctggg
cactttggtctaggctttgaggcatacacgcactttacttcgccaattcgcagatatagc
gaccttatagttcacaggcttttaaaggcaattaacaataacgatactgccgaagggtca
tatgttcttagaaatatagagtctctaagcatgacaataagtgaaaaagagagagaagca
agtactatagaagttgaatttatggcacgaaagtttgcaagatgggctgagcaaaatata
aataaagagtttaaagcacgaataagttcaactgaccctgaggtaaaagctgaactacat
gatgagattaaaggtgcaaaactaaatataacctctagtgaaaatgcaactctctttgaa
gatgtgacagtctgtattgacaaggtagatatcgccaaagctaaaatatttgcaagagtt
gtacaaaaagatattgactag
DBGET
integrated database retrieval system
