Sphingobacterium bambusae: SCB77_06405
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Entry
SCB77_06405 CDS
T09645
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCB77_06405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbam03019
]
SCB77_06405
03009 Ribosome biogenesis [BR:
sbam03009
]
SCB77_06405
Enzymes [BR:
sbam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCB77_06405
Messenger RNA biogenesis [BR:
sbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCB77_06405
Ribosome biogenesis [BR:
sbam03009
]
Prokaryotic type
rRNA helicases
SCB77_06405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WPL50079
LinkDB
All DBs
Position
complement(1497793..1499601)
Genome browser
AA seq
602 aa
AA seq
DB search
MNPFLDLGIRHEVVNAIAEIGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLELIDFTQKHPQALVLCPTRELCLQIAKDLEKFAKYIDNVHVVAVYGGANISDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSDVKYVVLDEADEMLNMGFQEDINNILSETPDTKKT
WLFSATMPKEVRRIAQNYMSNPFELTVGTKNTGNANIEHHYYLIKAKDKYAAFKRIVDFY
PEIFGIVFCRTKIETQEIAEALVKDGYNADSLHGDLSQQQRDKVMKRYRERSLQLLIATD
VAARGIDVNDVTHVINFSLPDEVENYTHRSGRTARAGKTGISLSLVNVKELSKIRHIEKI
IGKPFEKKEVPQGAEVCEKQLFKMIDKVHNVDINEEQIAPFIPKIMESMQDLSKEDIIKR
FASLEFNRFLEYYQNAPDLNIDARDSRRDSDRGERGERGMRSSRGYTRLFMNLGSVDEFS
RGDMLGFICNTAKISGKSIGKIDLKGVFTFFEVEDAEVNKVFEEFKGVDFNGRQVRIEVS
GEATGGREGRGGRPPRGGDRNRGGGDRDRNRGGGDRRGSRDRRDSGGFRDFSGKKQTTRS
KY
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagacttgggaatccgtcatgaagttgttaatgccatcgctgagatc
ggttttgaaaaaccatctcccatccaggaaaaagccattcctgtattactgactggtaac
gacgattttgtcggattagcccaaaccggcacaggaaagaccgcggcatttggtcttcca
ttattagagttaattgactttactcaaaaacacccacaggcactagtattatgtcctact
cgtgagttgtgtttacaaattgcaaaagatttagagaaattcgcaaagtacattgacaat
gtacatgtcgttgctgtttatggtggcgccaacatttctgatcaattgcgtcaaatccgt
cgcggcgtgcagattgttgttgctacgcccggacgtatgttagacatcatcggcagaaat
gccatcgatttttccgacgttaaatatgtcgtgttggatgaagccgatgagatgttgaat
atgggattccaagaggatataaacaatattctttcggagacgcccgacactaagaaaacc
tggttgttttcagctacgatgcctaaagaggtacgccgtatagcacaaaactatatgagc
aatcctttcgagctaacagtaggtaccaaaaacaccgggaatgcaaacattgaacaccat
tactatttaattaaggctaaagataaatatgcggcgttcaaacgtattgtagacttctat
ccggaaattttcggtatcgttttctgccgtacaaagatcgaaacgcaagagattgcagaa
gctttagtgaaagatggatataatgccgattcactgcatggcgatttgtcgcagcaacaa
cgcgacaaggtgatgaagcgctaccgcgaacgtagcttacagctgttgattgcaacggat
gttgctgcacgtggtattgacgttaacgacgtaacgcacgttattaacttttctttacca
gatgaggtagagaactacacccaccgctcgggccgtaccgctcgtgctggtaaaacaggt
atctccctttcgttggtgaacgtgaaagagttgagcaagatccgtcatatcgaaaaaatt
atcggtaagccgtttgaaaagaaagaagttccacaaggagcggaagtttgtgaaaaacaa
cttttcaaaatgatcgacaaagtgcacaatgtggatatcaatgaggagcagatcgcacca
ttcattccaaagattatggaaagcatgcaagatctttccaaagaggatatcatcaaacgt
ttcgcttctttagagtttaatcgtttcttggaatactatcaaaatgcacctgatttaaat
atcgatgcccgtgatagccgtagagatagcgacagaggagaacgtggtgagcgtggtatg
cgttcgtcaagaggatacacgcgcttgttcatgaacttaggttctgtagatgaattcagc
cgtggagacatgcttggttttatctgtaataccgctaaaatttctggtaaatcaatcggt
aaaattgatttgaaaggtgtgtttaccttcttcgaagtggaagatgcagaggtgaacaag
gtgtttgaagaattcaaaggcgttgacttcaacggacgtcaggtacgtatcgaagtttct
ggagaagctacaggaggtcgtgaaggccgtggcggacgtcctcctcgcggaggcgacaga
aaccgtggcggtggcgatcgtgatcgtaaccgtggcggcggagacagacgtggttctaga
gatagacgtgattcaggtggcttccgtgatttctcgggcaaaaagcaaactacgcgttct
aaatattaa
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