Sphingobacterium bambusae: SCB77_12235
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Entry
SCB77_12235 CDS
T09645
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
sbam
Sphingobacterium bambusae
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbam03019
]
SCB77_12235
03009 Ribosome biogenesis [BR:
sbam03009
]
SCB77_12235
Messenger RNA biogenesis [BR:
sbam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCB77_12235
Ribosome biogenesis [BR:
sbam03009
]
Prokaryotic type
rRNA processing factors
SCB77_12235
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
DnaJ_CXXCXGXG
RNase_E_G_Thio
LCIB_C_CA
Motif
Other DBs
NCBI-ProteinID:
WPL46737
LinkDB
All DBs
Position
2926520..2928073
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AA seq
517 aa
AA seq
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MVKELIIDSTPDKGVTIALLQDKQLVELNKEKADNSFAVGDIYLGRIKKIMPGLNAAFVD
VGYEKDAFLHYLDLGPQVQSLLKLTRIVKNGSYQEKLLNSLKLEKDIDKAGKISDILSRN
VLLPVQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSSTVSISKRIKGNAERTRLKKIVES
IKPANFGVIIRTVSENKGVEELQKDLLDLISKWELFSKRLKTAEPTHKVLGEMDRASTIL
RDILTDEFAHIHVNDSALYDEVKSYVQEISPDLEKIVKQYKHKEPIFDHFGVERQIKASF
GKTVNLQGGAYLVIEHTEALHVVDVNSGNRIASKENQEENALLVNKEAAKEIARQLRLRD
MGGIVVIDFIDMHKPTNRKELYSYLKECMVNDRAKHTILPPSKFGLVQITRQRVRPEMSV
VTSEKCPACGGTGEIRSSMILLDDIENNLSFILQEQNEKGVTLSVHPYIGAYITSGLFSR
RIKWFFKYGKWIKIKTVSSYYLTQFRFFNSKEEEIKL
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttggtaaaggaactaattatcgattctactcccgataaaggagtgactattgctttacta
caggacaaacagcttgttgagctgaacaaagaaaaggctgataatagtttcgccgtgggc
gacatttaccttgggcggatcaaaaagattatgcccggtttaaatgccgcattcgtagat
gtaggctacgaaaaagatgcgttcttacattatttggatttagggccacaggttcagtct
ttactcaagctgacgcgtattgtaaagaatggcagctatcaagagaagctgctcaatagt
ctgaaacttgaaaaggacatcgataaagccgggaagatttcggatattttaagccgaaac
gtgcttttaccagtacagattgccaaagaacctatctcgacgaagggacccagattgagt
tctgacctctccatcgcaggtagattcgttgtattggtgccattttcaagtacagtttcc
atctccaagaggattaaagggaatgccgaacgtacgcgactgaagaaaattgtagaaagt
attaaacctgcaaacttcggcgtgatcatacggacggtttctgaaaacaaaggtgtcgaa
gaactacagaaagaccttttggacttaatctctaaatgggagctttttagcaaacgcctt
aaaactgctgaaccaacgcacaaggtgctcggagaaatggatcgtgcatccactattctg
cgggacatcttgacggatgagtttgcgcatattcatgtgaatgattcggccttgtacgat
gaagtaaaatcatatgtacaggagatttcacctgatttggaaaagatagttaagcagtat
aagcataaggaacctatctttgaccattttggtgtggagcgccaaattaaggcttctttt
ggcaaaacggtaaatctacagggcggtgcttatctagtgatcgagcacaccgaagcactt
cacgtggtggatgtgaacagtggaaaccggatagctagtaaagaaaatcaagaagaaaat
gctctgctggtcaataaagaggccgcaaaggaaatcgcaaggcaattgcggttgcgtgat
atgggcggtatcgttgtgatcgattttatcgacatgcataagccgaccaatcgtaaagag
ctgtacagttatctgaaggaatgcatggttaatgaccgtgcaaaacacaccatccttccg
ccaagtaaatttggcttggtgcagataacgagacagcgcgtcagacctgaaatgagcgtg
gtgacaagtgagaaatgtcccgcatgtggaggtactggcgaaatccgctcgagcatgata
ttgcttgatgacatcgagaataatttgagttttatcttgcaagaacaaaacgaaaaagga
gtgacactttccgtgcatccttatataggcgcctacattacgtcgggtttgttctcaagg
cgaatcaaatggtttttcaaatacggcaagtggattaaaattaagaccgtatcatcttat
tatctgacgcaatttcgattctttaatagtaaggaagaagaaattaagttataa
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