Sphingobacterium bambusae: SCB77_12400
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Entry
SCB77_12400 CDS
T09645
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03030
DNA replication
sbam03410
Base excision repair
sbam03420
Nucleotide excision repair
sbam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCB77_12400 (polA)
03410 Base excision repair
SCB77_12400 (polA)
03420 Nucleotide excision repair
SCB77_12400 (polA)
03440 Homologous recombination
SCB77_12400 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbam03032
]
SCB77_12400 (polA)
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_12400 (polA)
Enzymes [BR:
sbam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SCB77_12400 (polA)
DNA replication proteins [BR:
sbam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCB77_12400 (polA)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SCB77_12400 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCB77_12400 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
DUF3913
Motif
Other DBs
NCBI-ProteinID:
WPL46764
LinkDB
All DBs
Position
complement(2958485..2961280)
Genome browser
AA seq
931 aa
AA seq
DB search
MKKLFLLDGMALIYRAYFALSKVPRLTSYGLNTGAIMGFTNTLLELLKNQQPSHIAVVFD
TEAPTSRHIEFEAYKAHREKMPEDLAASIPYIFRLIEGFNIPIITQDGFEADDIIGTLAK
KAEKEGFTVYCMTPDKDFGQLVSENIFIYKPARMGNGAETLGVPEILSKWEITDVSQVID
ILGLWGDAVDNIPGIPGIGEKTAKKLIQEFGSVEGIIENSDKLKGKLKENVENFAEQGRI
SKKLATILLDVPIELDEKSLELEDPNRALLEPLFAELEFRTLGKRVFGDDFSIGEANNSV
STGQMDLFAPATVEVTAIAAPQEPLTPTLNIHNTDHNYILVDETAAQQALAEELSKQKSF
CFDTETTSLDALTAEIVGISFSFEKGKAYYVPTAADPISAQATVDIFKAILENPLIEKVG
QNLKYDMLLLSRYGIKVQGPLFDTMIAHYLIDPDTRHNMDILAENYLGYTPVSITELIGP
KGKNQLSMRDVDVEKVKEYAAEDADITWQLHEVLKPLLVETKTLELAQTVEFPLIYVLAE
IEKNGVKVDVGTLRSFSGLLQEDIQRLENTIYEKAGVHFNIASPKQLGEILFDKLQLDPK
AKKTKTGQYKTGEDVLLTLAHKSDIVQDILDFRQLQKLKSTYVDALPGLINAETGLIHTS
YNQAVAATGRLSSTNPNLQNIPIRTEKGREVRKAFIARDASHVLLSADYSQIELRLIAAL
SKDQGMLEAFREGHDIHRATAARVYGISLDEVSADQRRNAKAVNFGIIYGQSAFGLSQSL
GIPRKEAGAMIDQYFTQYAGIRQYMSKAVEFAKEKGYVETILKRRRYLRDINSANMTVRG
FAERNAINAPIQGSAADLIKVAMINIQQDIDESGLRGKMIMQVHDELVFDVPSDEVEKFS
DIIKDRMQGAIALEVPLEVEVGQGNNWLEAH
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaaactctttcttttggacggtatggctcttatctacagagcttattttgcgttg
agtaaggttccccgattgacctcttatggactcaatacaggagcaattatgggatttact
aatacgctattggaattgctcaagaaccagcaacccagccatattgccgttgtatttgat
acagaagcgcccaccagtcgccatatcgagtttgaagcatataaagctcaccgcgagaaa
atgcccgaagacttggcggcctccatcccctatatttttcgccttatagaaggttttaac
attcccatcatcacacaggatggctttgaagcggatgatatcattggaacgctcgctaaa
aaggcggagaaggaaggctttacggtatactgcatgacgccagacaaagattttggacaa
ctggtgtccgaaaacatctttatttataagccggcgagaatgggcaatggagccgaaacc
ttgggcgtacccgaaattctctccaaatgggaaattacggacgtgtctcaagtcatcgac
atcttaggcctttggggcgacgccgtcgataatatccccggaatacccggaattggagag
aagacggcaaaaaaactaattcaagaatttggatcggtggaaggcatcattgaaaatagc
gacaaactaaagggcaagctcaaggagaacgtggaaaacttcgccgagcagggacgaatc
tctaaaaagctcgcaaccattttactggatgtgcctatcgagctggatgagaaaagcctc
gagctagaagacccgaaccgagccctgctggagcctcttttcgccgaactggaattccgt
acactcggaaagcgcgtttttggagacgacttcagtatcggggaagcgaacaatagcgtt
tctacgggacagatggatttatttgctccagcaacggtcgaagtgaccgcgatagcagcg
ccgcaggaaccgcttacgcctacgctaaacatccacaacacagatcacaactacatcttg
gtcgacgaaacggccgcgcaacaggccttagcagaagagctatccaagcaaaaaagcttc
tgctttgatacggagactacgtcgctagacgctcttaccgccgaaatcgtcggcatatca
ttttcttttgaaaaaggaaaagcttactatgttcccactgccgctgaccctatatcggca
caagcgacagtagacatctttaaagcaattctggaaaatccgcttatcgaaaaagtagga
cagaaccttaagtacgacatgttgttgctgtcgcgctatggtatcaaggttcaaggcccg
cttttcgacacgatgattgcgcactatcttatcgatccggacacccgccacaacatggat
atcctcgccgaaaattacctcggatatacgccggtatctattacggaactgatcggccca
aaaggcaagaaccagttgagcatgcgcgatgtagatgtcgaaaaggtaaaggaatatgcc
gccgaagatgctgacatcacttggcaactacatgaagtattgaaaccgctacttgtggaa
accaaaacattggaactggcgcaaaccgtagaattcccacttatctacgtcttggctgaa
atagaaaaaaatggggttaaggtagacgtgggcacgcttcgctcgttctctggccttttg
caagaagatatccagcgattggaaaacactatctatgagaaagcaggggtacatttcaat
atcgcatcgccgaagcagttgggcgaaattctttttgacaagttacaactcgatcccaaa
gcaaagaaaacaaaaaccggtcagtacaaaaccggtgaagatgtgctattgacgctggcg
cataaatccgatattgtacaggacattttggatttcaggcagctacaaaaactaaaatct
acctatgtagatgcgctccccggacttataaacgccgaaactggactcatacacacctca
tacaaccaagccgttgccgctaccggccggctgagttcgacaaatcctaacctacagaac
atccctatccgcacggagaaaggacgcgaagtacgtaaagcatttatcgcgcgcgatgct
tcccatgtgttgctatctgccgattattcacagatcgaactgcggctgattgctgcacta
agtaaagaccaaggtatgttggaggcttttcgcgaaggacacgacattcaccgcgctacg
gcagcccgtgtatacggtatatcactcgacgaggtaagtgctgaccaacgaagaaatgcg
aaggctgttaactttggcattatttacgggcaatctgctttcgggttatcccaaagcctg
ggtatccctagaaaagaagccggagccatgattgatcaatattttacccagtacgctgga
attaggcagtacatgtccaaggccgtagaattcgccaaagaaaagggatacgtagaaact
atcctcaaaaggaggcgttatttaagagatatcaattcggccaacatgactgtacgtgga
tttgcggaacgaaatgcgatcaatgcgccaatacaaggatctgcggcagatcttatcaag
gttgcgatgatcaatattcaacaggatatcgacgaatcaggacttcggggcaagatgata
atgcaggtgcacgatgagcttgtatttgatgtcccaagcgacgaagtagaaaaattttcc
gacatcatcaaagatcgaatgcaaggggcgatagcgcttgaagtacctctagaagttgaa
gttgggcagggcaataattggttggaagcacactaa
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