Sphingobacterium bambusae: SCB77_15500
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Entry
SCB77_15500 CDS
T09645
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03410
Base excision repair
sbam03430
Mismatch repair
sbam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SCB77_15500 (recJ)
03430 Mismatch repair
SCB77_15500 (recJ)
03440 Homologous recombination
SCB77_15500 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_15500 (recJ)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SCB77_15500 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SCB77_15500 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCB77_15500 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
DNA_ligase_aden
Motif
Other DBs
NCBI-ProteinID:
WPL47360
LinkDB
All DBs
Position
complement(3732141..3733835)
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AA seq
564 aa
AA seq
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MQKRWVVKPKNDVKKTNKLRDELGVSPIIAELLLNRGIESFDAAKYFFRPMLDSLHDPFL
MKDMDQAISRIERAIGNKEKILIYGDYDVDGTTAVSVVYSFFRDFHSGLEFYIPDRYLEG
YGISNAGIDYAAAHGFTLIIALDCGIKAIDKVNYAQAKGIDFIIGDHHLPGESIPDAVAV
LDPKRVDCSYPYKELSGCGIGFKIIQAFIQKNAMDMQLAYQYLDLVAVSIASDIVPITGE
NRILTHFGLKKLNTNPNCGLQALINLSSNKTGQFSVNDIVFQIGPRINAAGRIEHAKDAV
KLLISKSLQEAKDYSVTVDDQNNLRKDFDLKITEEALDIINNDEILKARKSTVLFKEDWH
KGVIGIVASRLTEKYYRPTIILTQTNGHIAGSARSVIGFDLYEALSECSDLLEQYGGHKY
AAGLTMSLENVPAFQEKFEQVVSSSIKPEMLQQEVLIEAELGFKDIDAKFYRLLRQFEPF
GPHNEAPILLTSKVFGSGYIVGSNHIKITVRQEGGFSFECIGFGLASAIDHINAGKPFDM
CYTIEENNWRGKKNLQLNIKAIRY
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaaggtgggtagtaaagccaaaaaatgatgtcaaaaaaacgaacaaactgcgt
gacgaactgggtgtaagtccgattatcgcagagttgctcttaaaccggggcatcgagagc
tttgacgccgccaagtattttttcagaccgatgctggatagcttgcatgatccttttctc
atgaaagatatggaccaagcgatatcccgaatcgaacgtgctattggcaataaggaaaaa
atactgatctacggcgattatgacgttgatggaactacagccgtatccgttgtctacagt
ttctttcgggattttcattcggggttagaattttatattcccgatcgatatttggaaggc
tacgggatatcaaacgctggtatcgactacgccgcagcacacggatttacattgatcatt
gcgttggactgtggcatcaaggcgatcgataaagtcaactatgcacaagcgaaagggatc
gacttcatcattggcgatcaccatttgcccggtgaatccattccggatgccgttgccgta
cttgatccgaagcgtgtggattgctcctacccttacaaagagctttctggatgtgggatt
ggcttcaagattatccaggcatttatccaaaagaacgcgatggacatgcagttggcctac
caatacttggatcttgttgccgtgagcatagcgtccgacattgtgcccataaccggtgaa
aaccgcatccttacgcatttcggactaaaaaagctgaataccaaccctaattgtggcctg
caggcattgatcaatctttcctccaataaaacggggcagttttcggtgaacgatattgtt
ttccagatcggaccacgcataaacgccgccggcagaattgaacacgccaaagatgccgta
aaattactgatttcgaaatcattgcaagaggcgaaggactattccgttacggttgatgat
caaaacaatctgcgtaaggacttcgacctaaagataaccgaggaagcgctggacatcatc
aataacgatgaaatattaaaagctagaaaatccacggtcttgtttaaggaagattggcac
aaaggggtaattggcatcgtagcatcccgtttaacggaaaaatactaccgcccgacgatc
atcttaacacaaaccaatggacatattgcagggtcagcacgatcggtgatcggcttcgac
ctgtatgaagcgcttagcgaatgtagtgatttgctggagcagtatggtggacacaaatac
gctgccggcttaaccatgagcttggaaaacgtgccagcctttcaagaaaaatttgaacag
gtagtgagcagcagcataaaaccggagatgctgcaacaggaagtactcatagaggccgaa
ttgggcttcaaagatatcgatgctaagttctaccgtttgctccgtcaatttgagcccttc
gggccacacaatgaggcccctatactattgaccagtaaagtatttggaagcggctatatt
gtgggcagcaaccatattaagatcacggtacgccaagaagggggctttagttttgagtgt
atcggctttggcttggctagtgccatcgatcacatcaatgcgggaaagccttttgatatg
tgttacacgatcgaagagaacaactggagaggcaaaaagaatttacaattaaatatcaaa
gcaattcgatattaa
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